/usr/lib/R/site-library/adephylo/INDEX is in r-cran-adephylo 1.1-11-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 | .tipToRoot Low-level auxiliary functions for adephylo
abouheif.moran Abouheif's test based on Moran's I
adephylo-package The adephylo package
bullseye Fan-like phylogeny with possible representation
of traits on tips
carni19 Phylogeny and quantative trait of carnivora
carni70 Phylogeny and quantitative traits of carnivora
dibas DIstance-Based Assignment
distRoot Compute the distance of tips to the root
distTips Compute some phylogenetic distance between tips
listDD List direct descendants for all nodes of a tree
listTips List tips descendings from all nodes of a tree
lizards Phylogeny and quantitative traits of lizards
maples Phylogeny and quantitative traits of flowers
mjrochet Phylogeny and quantitative traits of teleos
fishes
moran.idx Computes Moran's index for a variable
orthobasis.phylo Computes Moran's eigenvectors from a tree or a
phylogenetic proximity matrix
orthogram Orthonormal decomposition of variance
palm Phylogenetic and quantitative traits of
amazonian palm trees
ppca Phylogenetic principal component analysis
procella Phylogeny and quantitative traits of birds
proxTips Compute some phylogenetic proximities between
tips
sp.tips Find the shortest path between tips of a tree
table.phylo4d Graphical display of phylogeny and traits
tithonia Phylogeny and quantitative traits of flowers
treePart Define partitions of tips according from a tree
ungulates Phylogeny and quantitative traits of ungulates.
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