This package is 2.3 MB.
It is available at http://archive.ubuntu.com/ubuntu/pool/universe/r/r-bioc-variantannotation/r-bioc-variantannotation_1.24.2-1_amd64.deb
.
View its full control file here:
debian/control.
BioConductor annotation of genetic variants
This package depends on:
r-base-core (>= 3.4.3-1), r-api-3.4, r-bioc-biocgenerics (>= 0.15.3), r-bioc-genomeinfodb (>= 1.11.4), r-bioc-genomicranges (>= 1.27.6), r-bioc-summarizedexperiment (>= 1.5.3), r-bioc-rsamtools (>= 1.23.10), r-cran-dbi, r-bioc-biobase, r-bioc-s4vectors (>= 0.13.13), r-bioc-iranges (>= 2.3.25), r-bioc-xvector (>= 0.5.6), r-bioc-biostrings (>= 2.33.5), r-bioc-annotationdbi (>= 1.27.9), r-bioc-bsgenome (>= 1.37.6), r-bioc-rtracklayer (>= 1.25.16), r-bioc-genomicfeatures (>= 1.27.4), libc6 (>= 2.15), zlib1g (>= 1:1.2.3.3).
This package does not recommend any other package.
This package suggests:
r-cran-runit, r-bioc-annotationhub, r-bioc-snpstats, r-cran-ggplot2.
This package does not conflict with any other package.
r-bioc-variantannotation 1.24.2-1 is in ubuntu - bionic / universe. This package's architecture is: amd64.
| File | Mime Type | Owner | Mode | Size |
|---|---|---|---|---|
/usr/
|
root:root | 0o755 | ||
/usr/lib/
|
root:root | 0o755 | ||
/usr/lib/R/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/VariantAnnotation/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/VariantAnnotation/CITATION
|
text/plain | root:root | 0o644 | 1.7 KB |
/usr/lib/R/site-library/VariantAnnotation/DESCRIPTION
|
text/plain | root:root | 0o644 | 1.7 KB |
/usr/lib/R/site-library/VariantAnnotation/doc/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/VariantAnnotation/doc/filterVcf.pdf
|
application/pdf | root:root | 0o644 | 172.5 KB |
/usr/lib/R/site-library/VariantAnnotation/doc/filterVcf.R
|
text/plain | root:root | 0o644 | 3.0 KB |
/usr/lib/R/site-library/VariantAnnotation/doc/filterVcf.Rnw
|
text/x-tex | root:root | 0o644 | 12.3 KB |
/usr/lib/R/site-library/VariantAnnotation/doc/index.html
|
text/html | root:root | 0o644 | 2.0 KB |
/usr/lib/R/site-library/VariantAnnotation/doc/VariantAnnotation.pdf
|
application/pdf | root:root | 0o644 | 199.1 KB |
/usr/lib/R/site-library/VariantAnnotation/doc/VariantAnnotation.R
|
text/plain | root:root | 0o644 | 9.2 KB |
/usr/lib/R/site-library/VariantAnnotation/doc/VariantAnnotation.Rnw
|
text/x-tex | root:root | 0o644 | 20.6 KB |
/usr/lib/R/site-library/VariantAnnotation/extdata/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/VariantAnnotation/extdata/chr22.vcf.gz
|
application/gzip | root:root | 0o644 | 548.5 KB |
/usr/lib/R/site-library/VariantAnnotation/extdata/chr22.vcf.gz.tbi
|
application/gzip | root:root | 0o644 | 655 bytes |
/usr/lib/R/site-library/VariantAnnotation/extdata/chr7-sub.vcf.gz
|
application/gzip | root:root | 0o644 | 110.5 KB |
/usr/lib/R/site-library/VariantAnnotation/extdata/chr7-sub.vcf.gz.tbi
|
application/gzip | root:root | 0o644 | 744 bytes |
/usr/lib/R/site-library/VariantAnnotation/extdata/ex2.vcf
|
text/plain | root:root | 0o644 | 1.8 KB |
/usr/lib/R/site-library/VariantAnnotation/extdata/gl_chr1.vcf
|
text/plain | root:root | 0o644 | 24.2 KB |
/usr/lib/R/site-library/VariantAnnotation/extdata/h1187-10k.vcf.gz
|
application/gzip | root:root | 0o644 | 121.9 KB |
/usr/lib/R/site-library/VariantAnnotation/extdata/h1187-10k.vcf.gz.tbi
|
application/gzip | root:root | 0o644 | 441 bytes |
/usr/lib/R/site-library/VariantAnnotation/extdata/hapmap_exome_chr22.vcf.gz
|
application/gzip | root:root | 0o644 | 365.6 KB |
/usr/lib/R/site-library/VariantAnnotation/extdata/hapmap_exome_chr22.vcf.gz.tbi
|
application/gzip | root:root | 0o644 | 4.4 KB |
/usr/lib/R/site-library/VariantAnnotation/extdata/structural.vcf
|
text/plain | root:root | 0o644 | 3.0 KB |
/usr/lib/R/site-library/VariantAnnotation/help/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/VariantAnnotation/help/aliases.rds
|
application/gzip | root:root | 0o644 | 2.9 KB |
/usr/lib/R/site-library/VariantAnnotation/help/AnIndex
|
text/plain | root:root | 0o644 | 15.1 KB |
/usr/lib/R/site-library/VariantAnnotation/help/paths.rds
|
application/gzip | root:root | 0o644 | 429 bytes |
/usr/lib/R/site-library/VariantAnnotation/help/VariantAnnotation.rdb
|
application/octet-stream | root:root | 0o644 | 185.0 KB |
/usr/lib/R/site-library/VariantAnnotation/help/VariantAnnotation.rdx
|
application/gzip | root:root | 0o644 | 840 bytes |
/usr/lib/R/site-library/VariantAnnotation/html/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/VariantAnnotation/html/00Index.html
|
text/html | root:root | 0o644 | 35.9 KB |
/usr/lib/R/site-library/VariantAnnotation/html/R.css
|
text/plain | root:root | 0o644 | 1.3 KB |
/usr/lib/R/site-library/VariantAnnotation/INDEX
|
text/plain | root:root | 0o644 | 1.6 KB |
/usr/lib/R/site-library/VariantAnnotation/libs/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/VariantAnnotation/libs/VariantAnnotation.so
|
application/x-sharedlib | root:root | 0o644 | 123.1 KB |
/usr/lib/R/site-library/VariantAnnotation/Meta/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/VariantAnnotation/Meta/features.rds
|
application/gzip | root:root | 0o644 | 112 bytes |
/usr/lib/R/site-library/VariantAnnotation/Meta/hsearch.rds
|
application/gzip | root:root | 0o644 | 3.4 KB |
/usr/lib/R/site-library/VariantAnnotation/Meta/links.rds
|
application/gzip | root:root | 0o644 | 2.9 KB |
/usr/lib/R/site-library/VariantAnnotation/Meta/nsInfo.rds
|
application/gzip | root:root | 0o644 | 1.6 KB |
/usr/lib/R/site-library/VariantAnnotation/Meta/package.rds
|
application/gzip | root:root | 0o644 | 1.6 KB |
/usr/lib/R/site-library/VariantAnnotation/Meta/Rd.rds
|
application/gzip | root:root | 0o644 | 3.3 KB |
/usr/lib/R/site-library/VariantAnnotation/Meta/vignette.rds
|
application/gzip | root:root | 0o644 | 271 bytes |
/usr/lib/R/site-library/VariantAnnotation/NAMESPACE
|
text/plain | root:root | 0o644 | 3.2 KB |
/usr/lib/R/site-library/VariantAnnotation/NEWS
|
text/plain | root:root | 0o644 | 17.1 KB |
/usr/lib/R/site-library/VariantAnnotation/R/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/VariantAnnotation/R/VariantAnnotation
|
text/plain | root:root | 0o644 | 1.0 KB |
/usr/lib/R/site-library/VariantAnnotation/R/VariantAnnotation.rdb
|
application/octet-stream | root:root | 0o644 | 797.5 KB |
/usr/lib/R/site-library/VariantAnnotation/R/VariantAnnotation.rdx
|
application/gzip | root:root | 0o644 | 8.9 KB |
/usr/lib/R/site-library/VariantAnnotation/scripts/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/VariantAnnotation/scripts/test_Rplinkseq.R
|
text/plain | root:root | 0o644 | 10.7 KB |
/usr/lib/R/site-library/VariantAnnotation/unitTests/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/banded_gvcf.vcf
|
text/plain | root:root | 0o644 | 3.6 KB |
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/expand.vcf
|
text/plain | root:root | 0o644 | 1.8 KB |
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/fewer-FORMAT-than-GENO.vcf
|
text/plain | root:root | 0o644 | 614 bytes |
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/FORMAT_header_no_SAMPLEs.vcf
|
text/plain | root:root | 0o644 | 602 bytes |
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/missing-FORMAT-metadata-elt.vcf
|
text/plain | root:root | 0o644 | 553 bytes |
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/mixedStructural.vcf
|
text/plain | root:root | 0o644 | 2.9 KB |
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/multiple_INFO_fields.vcf
|
text/plain | root:root | 0o644 | 439 bytes |
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/negative_FORMAT_Number.vcf
|
text/plain | root:root | 0o644 | 3.0 KB |
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/no_FORMAT_column.vcf
|
text/plain | root:root | 0o644 | 287 bytes |
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/no_GENO_row.vcf
|
text/plain | root:root | 0o644 | 573 bytes |
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/no_INFO_header.vcf
|
text/plain | root:root | 0o644 | 300 bytes |
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/unspecified_INFO_FORMAT_fields.vcf
|
text/plain | root:root | 0o644 | 1.6 KB |
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/VarScan_header.vcf
|
text/plain | root:root | 0o644 | 3.0 KB |
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_expand-methods.R
|
text/plain | root:root | 0o644 | 2.0 KB |
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_filterVcf.R
|
text/plain | root:root | 0o644 | 4.9 KB |
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_genotypeToSnpMatrix.R
|
text/plain | root:root | 0o644 | 7.6 KB |
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_isSNV.R
|
text/plain | root:root | 0o644 | 3.7 KB |
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_readVcf-methods.R
|
text/plain | root:root | 0o644 | 9.0 KB |
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_ScanVcfParam-class.R
|
text/plain | root:root | 0o644 | 2.8 KB |
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_scanVcf.R
|
text/plain | root:root | 0o644 | 4.3 KB |
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_snpSummary.R
|
text/plain | root:root | 0o644 | 1.3 KB |
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_summarizeVariants-methods.R
|
text/plain | root:root | 0o644 | 635 bytes |
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_VCF-class.R
|
text/plain | root:root | 0o644 | 9.4 KB |
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_VRanges-class.R
|
text/plain | root:root | 0o644 | 10.7 KB |
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_writeVcf-methods.R
|
text/plain | root:root | 0o644 | 3.7 KB |
/usr/share/
|
root:root | 0o755 | ||
/usr/share/doc/
|
root:root | 0o755 | ||
/usr/share/doc/r-bioc-variantannotation/
|
root:root | 0o755 | ||
/usr/share/doc/r-bioc-variantannotation/changelog.Debian.gz
|
application/gzip | root:root | 0o644 | 725 bytes |
/usr/share/doc/r-bioc-variantannotation/copyright
|
text/plain | root:root | 0o644 | 5.3 KB |
/usr/share/doc/r-bioc-variantannotation/README.test
|
text/plain | root:root | 0o644 | 1.5 KB |
/usr/share/doc/r-bioc-variantannotation/run-unit-test
|
text/x-shellscript | root:root | 0o644 | 103 bytes |