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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 | Package: IRanges
Title: Infrastructure for manipulating intervals on sequences
Description: Provides efficient low-level and highly reusable S4
classes for storing, manipulating and aggregating over annotated
ranges of integers. Implements an algebra of range operations,
including efficient algorithms for finding
overlaps and nearest neighbors. Defines efficient
list-like classes for storing, transforming and aggregating
large grouped data, i.e., collections of atomic vectors and
DataFrames.
Version: 2.12.0
Encoding: UTF-8
Author: H. Pagès, P. Aboyoun and M. Lawrence
Maintainer: Bioconductor Package Maintainer <maintainer@bioconductor.org>
biocViews: Infrastructure, DataRepresentation
Depends: R (>= 3.1.0), methods, utils, stats, BiocGenerics (>= 0.23.3),
S4Vectors (>= 0.15.5)
Imports: stats4
LinkingTo: S4Vectors
Suggests: XVector, GenomicRanges, Rsamtools, GenomicAlignments,
GenomicFeatures, BSgenome.Celegans.UCSC.ce2, pasillaBamSubset,
RUnit
License: Artistic-2.0
Collate: range-squeezers.R Vector-class-leftovers.R
List-class-leftovers.R AtomicList-class.R Ranges-class.R
subsetting-utils.R Ranges-comparison.R IRanges-class.R
IRanges-constructor.R IRanges-utils.R IPos-class.R
Grouping-class.R CompressedList-class.R
CompressedList-comparison.R Views-class.R Rle-class-leftovers.R
RleViews-class.R RleViews-utils.R extractList.R seqapply.R
multisplit.R AtomicList-impl.R AtomicList-utils.R
ListGrouping-class.R Hits-class-leftovers.R DataFrame-utils.R
DataFrameList-class.R DataFrameList-utils.R RangesList-class.R
ViewsList-class.R RleViewsList-class.R RleViewsList-utils.R
MaskCollection-class.R RangedData-class.R RangedData-utils.R
CompressedHitsList-class.R NCList-class.R
RangedSelection-class.R read.Mask.R findOverlaps-methods.R
intra-range-methods.R inter-range-methods.R reverse-methods.R
coverage-methods.R slice-methods.R setops-methods.R
nearest-methods.R cbind-Rle-methods.R tile-methods.R zzz.R
NeedsCompilation: yes
Packaged: 2017-10-30 22:38:39 UTC; biocbuild
Built: R 3.4.3; x86_64-pc-linux-gnu; 'Mon, 18 Dec 2017 09:46:32 +0100'; unix
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