/usr/lib/R/site-library/GenomicRanges/INDEX is in r-bioc-genomicranges 1.30.0-1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 | Constraints Enforcing constraints thru Constraint objects
DelegatingGenomicRanges-class
DelegatingGenomicRanges objects
GNCList-class GNCList objects
GPos-class Memory-efficient representation of genomic
positions
GRanges-class GRanges objects
GRangesList-class GRangesList objects
GenomicRanges-comparison
Comparing and ordering genomic ranges
GenomicRangesList-class
GenomicRangesList objects
absoluteRanges Transform genomic ranges into "absolute" ranges
coverage-methods Coverage of a GRanges or GRangesList object
findOverlaps-methods Finding overlapping genomic ranges
genomic-range-squeezers
Squeeze the genomic ranges out of a range-based
object
genomicvars Manipulating genomic variables
inter-range-methods Inter range transformations of a GRanges or
GRangesList object
intra-range-methods Intra range transformations of a GRanges or
GRangesList object
makeGRangesFromDataFrame
Make a GRanges object from a data.frame or
DataFrame
makeGRangesListFromDataFrame
Make a GRangesList object from a data.frame or
DataFrame
nearest-methods Finding the nearest genomic range neighbor
phicoef Calculate the "phi coefficient" between two
binary variables
setops-methods Set operations on genomic ranges
strand-utils Strand utilities
tile-methods Generate windows for a GenomicRanges
tileGenome Put (virtual) tiles on a given genome
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