/usr/lib/R/site-library/GenomicRanges/DESCRIPTION is in r-bioc-genomicranges 1.30.0-1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 | Package: GenomicRanges
Title: Representation and manipulation of genomic intervals and
variables defined along a genome
Description: The ability to efficiently represent and manipulate genomic
annotations and alignments is playing a central role when it comes
to analyzing high-throughput sequencing data (a.k.a. NGS data).
The GenomicRanges package defines general purpose containers for
storing and manipulating genomic intervals and variables defined along
a genome. More specialized containers for representing and manipulating
short alignments against a reference genome, or a matrix-like
summarization of an experiment, are defined in the GenomicAlignments
and SummarizedExperiment packages respectively. Both packages build
on top of the GenomicRanges infrastructure.
Version: 1.30.0
Encoding: UTF-8
Author: P. Aboyoun, H. Pagès, and M. Lawrence
Maintainer: Bioconductor Package Maintainer <maintainer@bioconductor.org>
biocViews: Genetics, Infrastructure, Sequencing, Annotation, Coverage,
GenomeAnnotation
Depends: R (>= 2.10), methods, stats4, BiocGenerics (>= 0.21.2),
S4Vectors (>= 0.9.47), IRanges (>= 2.11.16), GenomeInfoDb (>=
1.13.1)
Imports: utils, stats, XVector
LinkingTo: S4Vectors, IRanges
Suggests: Biobase, AnnotationDbi (>= 1.21.1), annotate, Biostrings (>=
2.25.3), Rsamtools (>= 1.13.53), SummarizedExperiment (>=
0.1.5), Matrix, GenomicAlignments, rtracklayer, BSgenome,
GenomicFeatures, Gviz, VariantAnnotation, AnnotationHub,
DESeq2, DEXSeq, edgeR, KEGGgraph, BiocStyle, digest, RUnit,
BSgenome.Hsapiens.UCSC.hg19, BSgenome.Scerevisiae.UCSC.sacCer2,
KEGG.db, hgu95av2.db, org.Hs.eg.db, org.Mm.eg.db,
org.Sc.sgd.db, pasilla, pasillaBamSubset,
TxDb.Athaliana.BioMart.plantsmart22,
TxDb.Dmelanogaster.UCSC.dm3.ensGene,
TxDb.Hsapiens.UCSC.hg19.knownGene,
BSgenome.Mmusculus.UCSC.mm10,
TxDb.Mmusculus.UCSC.mm10.knownGene,
RNAseqData.HNRNPC.bam.chr14, hgu95av2probe
License: Artistic-2.0
Collate: utils.R phicoef.R transcript-utils.R constraint.R
strand-utils.R genomic-range-squeezers.R GenomicRanges-class.R
GenomicRanges-comparison.R GRanges-class.R GPos-class.R
DelegatingGenomicRanges-class.R GNCList-class.R
GenomicRangesList-class.R GRangesList-class.R
makeGRangesFromDataFrame.R makeGRangesListFromDataFrame.R
RangedData-methods.R findOverlaps-methods.R
intra-range-methods.R inter-range-methods.R coverage-methods.R
setops-methods.R nearest-methods.R absoluteRanges.R
tileGenome.R tile-methods.R genomicvars.R zzz.R
RoxygenNote: 5.0.1.9000
NeedsCompilation: yes
Packaged: 2017-10-30 23:03:01 UTC; biocbuild
Built: R 3.4.2; x86_64-pc-linux-gnu; 'Wed, 08 Nov 2017 15:04:48 +0100'; unix
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