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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 | Package: biovizBase
Version: 1.26.0
Title: Basic graphic utilities for visualization of genomic data.
Description: The biovizBase package is designed to provide a set of
utilities, color schemes and conventions for genomic data. It
serves as the base for various high-level packages for
biological data visualization. This saves development effort
and encourages consistency.
Authors@R: c(person("Tengfei", "Yin", role=c("aut"),
email="yintengfei@gmail.com"),
person("Michael", "Lawrence", role=c("aut", "ths", "cre"),
email="lawrence.michael@gene.com"),
person("Dianne", "Cook", role=c("aut", "ths")),
person("Johannes", "Rainer", role="ctb"))
Depends: R (>= 2.10), methods
Imports: grDevices, stats, scales, Hmisc, RColorBrewer, dichromat,
BiocGenerics, S4Vectors (>= 0.9.25), IRanges (>= 1.99.28),
GenomeInfoDb (>= 1.5.14), GenomicRanges (>= 1.23.21),
SummarizedExperiment, Biostrings (>= 2.33.11), Rsamtools (>=
1.17.28), GenomicAlignments (>= 1.1.16), GenomicFeatures (>=
1.21.19), AnnotationDbi, VariantAnnotation (>= 1.11.4),
ensembldb (>= 1.99.13), AnnotationFilter (>= 0.99.8)
Suggests: BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome, rtracklayer,
EnsDb.Hsapiens.v75, RUnit
License: Artistic-2.0
LazyLoad: Yes
Collate: utils.R color.R AllGenerics.R crunch-method.R mold-method.R
addStepping-method.R getFragLength-method.R
shrinkageFun-method.R maxGap-method.R spliceSummary-method.R
ideogram.R pileup.R coverage.R labs.R original.R transform.R
facets-method.R aes.R scale.R zzz.R biovizBase-package.R
biocViews: Infrastructure, Visualization, Preprocessing
NeedsCompilation: yes
Packaged: 2017-10-30 23:18:48 UTC; biocbuild
Author: Tengfei Yin [aut],
Michael Lawrence [aut, ths, cre],
Dianne Cook [aut, ths],
Johannes Rainer [ctb]
Maintainer: Michael Lawrence <lawrence.michael@gene.com>
Built: R 3.4.2; x86_64-pc-linux-gnu; 'Thu, 09 Nov 2017 10:57:05 +0100'; unix
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