/usr/lib/R/site-library/BiocParallel/NAMESPACE is in r-bioc-biocparallel 1.12.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 | useDynLib("BiocParallel", .registration = TRUE)
import(methods)
importFrom(stats, setNames, terms)
importFrom(utils, capture.output, find, head, relist,
setTxtProgressBar, txtProgressBar)
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### Export S4 classes
###
exportClass(
BiocParallelParam,
MulticoreParam,
SnowParam,
DoparParam,
SerialParam,
BatchJobsParam
)
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### Export non-generic functions
###
export(
MulticoreParam, SnowParam, DoparParam, SerialParam, BatchJobsParam,
## register
register, registered, bpparam,
## accessor
bpnworkers,
## error handlers
bpresume, bplasterror, bptry,
## helpers
bploop, # worker, manager loops
multicoreWorkers, snowWorkers, bpvalidate, bpok,
bprunMPIslave,
## ipcmutex
ipcid, ipcremove, ipclock, ipctrylock, ipcunlock, ipclocked,
ipcyield, ipcvalue, ipcreset
)
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### Export S4 generics and methods defined in BiocParallel
###
export(
bplapply, bpvec, bpvectorize, bpmapply, bpaggregate, bpiterate,
## bp-controls
bpworkers, "bpworkers<-", bpbackend, "bpbackend<-",
bptasks, "bptasks<-", bpjobname, "bpjobname<-",
bpstart, bpstop, bpisup,
bpcatchErrors, "bpcatchErrors<-", bpstopOnError, "bpstopOnError<-",
bpprogressbar, "bpprogressbar<-", bpRNGseed, "bpRNGseed<-",
bptimeout, "bptimeout<-", bplog, "bplog<-", bplogdir, "bplogdir<-",
bpthreshold, "bpthreshold<-", bpresultdir, "bpresultdir<-",
## schedule
bpschedule
)
### Same list as above.
exportMethods(
bplapply, bpvec, bpvectorize, bpmapply, bpaggregate, bpiterate,
## bp-controls
bpworkers, "bpworkers<-", bpbackend, "bpbackend<-",
bptasks, "bptasks<-", bpjobname, "bpjobname<-",
bpstart, bpstop, bpisup,
bpcatchErrors, "bpcatchErrors<-", bpstopOnError, "bpstopOnError<-",
bpprogressbar, "bpprogressbar<-", bpRNGseed, "bpRNGseed<-",
bptimeout, "bptimeout<-", bplog, "bplog<-", bplogdir, "bplogdir<-",
bpthreshold, "bpthreshold<-", bpresultdir, "bpresultdir<-",
## schedule
bpschedule
)
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### Export S4 methods for generics not defined in BiocParallel
###
exportMethods(
show
)
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### Export S3 methods
###
S3method(print, remote_error)
S3method(print, bplist_error)
S3method(bploop, MPInode)
S3method(bploop, SOCKnode)
S3method(bploop, SOCK0node)
S3method(bploop, lapply)
S3method(bploop, iterate)
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