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/usr/lib/python3/dist-packages/sklearn/manifold/ is in python3-sklearn-lib 0.19.1-3.

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/usr/lib/python3/dist-packages/sklearn/manifold/_barnes_hut_tsne.cpython-36m-x86_64-linux-gnu.so application/x-sharedlib root:root 0o644 195.5 KB
/usr/lib/python3/dist-packages/sklearn/manifold/_utils.cpython-36m-x86_64-linux-gnu.so application/x-sharedlib root:root 0o644 45.3 KB