/usr/lib/python2.7/dist-packages/woo/tests/pbc.py is in python-woo 1.0+dfsg1-2.
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# 2010 © Václav Šmilauer <eudoxos@arcig.cz>
'''
Various computations affected by the periodic boundary conditions.
'''
import unittest
import random,math
from minieigen import *
from woo._customConverters import *
from woo import utils
import woo
from woo.core import *
from woo.dem import *
class TestPBC(unittest.TestCase):
# prefix test names with PBC:
def setUp(self):
woo.master.scene=S=Scene(fields=[DemField()])
S.periodic=True;
S.cell.setBox(2.5,2.5,3)
self.cellDist=Vector3i(0,0,10) # how many cells away we go
self.relDist=Vector3(0,.999999999999999999,0) # rel position of the 2nd ball within the cell
self.initVel=Vector3(0,0,5)
S.dem.par.add(utils.sphere((1,1,1),.5))
self.initPos=Vector3([S.dem.par[0].pos[i]+self.relDist[i]+self.cellDist[i]*S.cell.hSize0.col(i).norm() for i in (0,1,2)])
S.dem.par.add(utils.sphere(self.initPos,.5))
S.dem.par[1].vel=self.initVel
S.engines=[Leapfrog(reset=True)]
S.cell.nextGradV=Matrix3(0,0,0, 0,0,0, 0,0,-1)
S.cell.homoDeform=Cell.HomoVel2
S.dem.collectNodes() # avoid msg from Leapfrog
S.dt=0 # do not change positions with dt=0 in NewtonIntegrator, but still update velocities from velGrad
def testVelGrad(self):
'PBC: velGrad changes hSize but not hSize0, accumulates in trsf (homoDeform=Cell.HomoVel2)'
S=woo.master.scene
S.cell.homoDeform=Cell.HomoVel2
S.dt=1e-3
hSize,trsf=S.cell.hSize,Matrix3.Identity
hSize0=hSize
for i in range(0,10):
hSize+=S.dt*S.cell.gradV*hSize; trsf+=S.dt*S.cell.gradV*trsf
S.one();
#print hSize, S.cell.hSize
#print trsf, S.cell.trsf
for i in range(0,len(S.cell.hSize)):
self.assertAlmostEqual(hSize[i],S.cell.hSize[i])
self.assertAlmostEqual(trsf[i],S.cell.trsf[i])
# ?? should work
#self.assertAlmostEqual(hSize0[i],S.cell.hSize0[i])
def testTrsfChange(self):
'PBC: chaing trsf changes hSize0, but does not modify hSize'
S=woo.master.scene
S.dt=1e-2
S.one()
S.cell.trsf=Matrix3.Identity
for i in range(0,len(S.cell.hSize)):
self.assertAlmostEqual(S.cell.hSize0[i],S.cell.hSize[i])
def testDegenerate(self):
"PBC: degenerate cell raises exception"
S=woo.master.scene
self.assertRaises(RuntimeError,lambda: setattr(S.cell,'hSize',Matrix3(1,0,0, 0,0,0, 0,0,1)))
def testSetBox(self):
"PBC: setBox modifies hSize correctly"
S=woo.master.scene
S.cell.setBox(2.55,11,45)
self.assert_(S.cell.hSize==Matrix3(2.55,0,0, 0,11,0, 0,0,45));
def testHomotheticResizeVel(self):
"PBC: homothetic cell deformation adjusts particle velocity (homoDeform==Cell.HomoVel)"
S=woo.master.scene
S.dt=1e-5
S.cell.homoDeform=Cell.HomoVel
s1=S.dem.par[1]
#print 'init',self.initPos,self.initVel
#print 'before',s1.pos,s1.vel
S.one()
#print 'after',s1.pos,s1.vel
self.assertAlmostEqual(s1.vel[2],self.initVel[2]+self.initPos[2]*S.cell.gradV[2,2])
def testHomotheticResizePos(self):
"PBC: homothetic cell deformation adjusts particle position (homoDeform==Cell.HomoPos)"
S=woo.master.scene
S.cell.homoDeform=Cell.HomoPos
S.one()
s1=S.dem.par[1]
self.assertAlmostEqual(s1.vel[2],self.initVel[2])
self.assertAlmostEqual(s1.pos[2],self.initPos[2]+self.initPos[2]*S.cell.gradV[2,2]*S.dt)
def testL6GeomIncidentVelocity(self):
"PBC: L6Geom incident velocity (homoDeform==Cell.HomoGradV2)"
S=woo.master.scene
S.cell.homoDeform=Cell.HomoGradV2
S.one()
S.engines=[ForceResetter(),ContactLoop([Cg2_Sphere_Sphere_L6Geom()],[Cp2_FrictMat_FrictPhys()],[Law2_L6Geom_FrictPhys_IdealElPl(noBreak=True)]),Leapfrog(reset=True)]
i=utils.createContacts([0],[1])[0]
S.dt=1e-10; S.one() # tiny timestep, to not move the normal too much
self.assertAlmostEqual(self.initVel.norm(),i.geom.vel.norm())
def testL3GeomIncidentVelocity_homoPos(self):
"PBC: L6Geom incident velocity (homoDeform==Cell.HomoPos)"
S=woo.master.scene
S.cell.homoDeform=Cell.HomoPos; S.one()
S.engines=[ForceResetter(),ContactLoop([Cg2_Sphere_Sphere_L6Geom()],[Cp2_FrictMat_FrictPhys()],[Law2_L6Geom_FrictPhys_IdealElPl(noBreak=True)]),Leapfrog(reset=True)]
i=utils.createContacts([0],[1])[0]
S.dt=1e-10; S.one()
self.assertAlmostEqual(self.initVel.norm(),i.geom.vel.norm())
#self.assertAlmostEqual(self.relDist[1],1-i.geom.penetrationDepth)
def testKineticEnergy(self):
"PBC: Particle.getEk considers only fluctuation velocity, not the velocity gradient (homoDeform==Cell.HomoVel2)"
S=woo.master.scene
S.cell.homoDeform=Cell.HomoVel2
S.one() # updates velocity with homotheticCellResize
# ½(mv²+ωIω)
# #0 is still, no need to add it; #1 has zero angular velocity
# we must take self.initVel since S.dem.par[1].vel now contains the homothetic resize which utils.kineticEnergy is supposed to compensate back
Ek=.5*S.dem.par[1].mass*self.initVel.squaredNorm()
self.assertAlmostEqual(Ek,S.dem.par[1].getEk(trans=True,rot=False,scene=S))
def testKineticEnergy_homoPos(self):
"PBC: utils.kineticEnergy considers only fluctuation velocity, not the velocity gradient (homoDeform==Cell.HomoPos)"
S=woo.master.scene
S.cell.homoDeform=Cell.HomoPos; S.one()
self.assertAlmostEqual(.5*S.dem.par[1].mass*self.initVel.squaredNorm(),S.dem.par[1].Ekt)
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