/usr/share/pegasus/examples/grid-blackdiamond-java/submit is in pegasus-wms 4.4.0+dfsg-7.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 | #!/bin/bash
set -e
#######################################################################
#
# Settings
#
CLUSTER_NAME="Obelix"
CLUSTER_HOSTNAME="obelix.isi.edu"
CLUSTER_SCHEDULER="condor"
CLUSTER_WORK_DIR="/nfs/ccg3/scratch"
CLUSTER_PEGASUS_HOME="/ccg/software/pegasus/dev/trunk"
CLUSTER_GLOBUS_LOCATION="/ccg/software/globus/default"
#######################################################################
TOPDIR=`pwd`
# pegasus bin directory is needed to find keg
BIN_DIR=`pegasus-config --bin`
# figure out where Pegasus is installed
if [ "x$GLOBUS_LOCATION" = "x" ]; then
echo "Pelase set GLOBUS_LOCATION to the location of your Pegasus install"
exit 1
fi
# generate the input file
echo "This is sample input to KEG" >f.a
# build the dax generator
CLASSPATH=`pegasus-config --classpath`
export CLASSPATH=".:$CLASSPATH"
javac BlackDiamondDAX.java
# generate the dax
java BlackDiamondDAX $CLUSTER_NAME $CLUSTER_PEGASUS_HOME blackdiamond.dax
# create the site catalog
cat >sites.xml <<EOF
<?xml version="1.0" encoding="UTF-8"?>
<sitecatalog xmlns="http://pegasus.isi.edu/schema/sitecatalog" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://pegasus.isi.edu/schema/sitecatalog http://pegasus.isi.edu/schema/sc-4.0.xsd" version="4.0">
<site handle="local" arch="x86" os="LINUX">
<directory type="shared-scratch" path="$TOPDIR/work">
<file-server operation="all" url="file://$TOPDIR/work"/>
</directory>
<directory type="local-storage" path="$TOPDIR/outputs">
<file-server operation="all" url="file://$TOPDIR/outputs"/>
</directory>
<profile namespace="env" key="GLOBUS_LOCATION" >$GLOBUS_LOCATION</profile>
</site>
<site handle="$CLUSTER_NAME" arch="x86" os="LINUX">
<grid type="gt5" contact="$CLUSTER_HOSTNAME/jobmanager-fork" scheduler="Fork" jobtype="auxillary"/>
<grid type="gt5" contact="$CLUSTER_HOSTNAME/jobmanager-$CLUSTER_SCHEDULER" scheduler="unknown" jobtype="compute"/>
<directory type="shared-scratch" path="$CLUSTER_WORK_DIR">
<file-server operation="all" url="gsiftp://$CLUSTER_HOSTNAME/$CLUSTER_WORK_DIR"/>
</directory>
<profile namespace="env" key="PEGASUS_HOME" >$CLUSTER_PEGASUS_HOME</profile>
<profile namespace="env" key="GLOBUS_LOCATION" >$CLUSTER_GLOBUS_LOCATION</profile>
</site>
</sitecatalog>
EOF
# plan and submit the workflow
pegasus-plan \
--conf pegasusrc \
--sites $CLUSTER_NAME \
--output-site local \
--dir work \
--dax blackdiamond.dax \
--submit
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