/usr/lib/python2.7/dist-packages/Pegasus/netlogger/analysis/workflow/util.py is in pegasus-wms 4.4.0+dfsg-7.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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Utility code to work with workflow databases.
"""
__rcsid__ = "$Id: util.py 28135 2011-07-05 20:07:28Z mgoode $"
__author__ = "Monte Goode"
from Pegasus.netlogger.analysis.schema.stampede_schema import *
from Pegasus.netlogger.analysis.modules._base import SQLAlchemyInit
from Pegasus.netlogger import util
from Pegasus.netlogger.nllog import DoesLogging
import os, time
class Expunge(SQLAlchemyInit, DoesLogging):
"""
Utility class to expunge a workflow and the associated data from
a stampede schema database in the case of running with the replay
option or a similar situation.
The wf_uuid that is passed into the constructor MUST be the
"top-level" workflow the user wants to delete. Which is to
say if the wf_uuid is a the child of another workflow, then
only the data associated with that workflow will be deleted.
Any parent or sibling workflows will be left untouched.
Usage::
from Pegasus.netlogger.analysis.workflow.util import Expunge
connString = 'sqlite:///pegasusMontage.db'
wf_uuid = '1249335e-7692-4751-8da2-efcbb5024429'
e = Expunge(connString, wf_uuid)
e.expunge()
All children/grand-children/etc information and associated
workflows will be removed.
"""
def __init__(self, connString, wf_uuid):
"""
Init object
@type connString: string
@param connString: SQLAlchemy connection string - REQUIRED
@type wf_uuid: string
@param wf_uuid: The wf_uuid string of the workflow to remove
along with associated data from the database
"""
raise NotImplementedError( "Please Load the appropriate Expunge Implementation")
pass
def expunge(self):
"""
Invoke this to remove workflow/information from DB.
"""
raise NotImplementedError( "Please Load the appropriate Expunge Implementation")
pass
class StampedeExpunge(Expunge):
"""
Utility class to expunge a workflow and the associated data from
a stampede schema database in the case of running with the replay
option or a similar situation.
The wf_uuid that is passed into the constructor MUST be the
"top-level" workflow the user wants to delete. Which is to
say if the wf_uuid is a the child of another workflow, then
only the data associated with that workflow will be deleted.
Any parent or sibling workflows will be left untouched.
Usage::
from Pegasus.netlogger.analysis.workflow.util import Expunge
connString = 'sqlite:///pegasusMontage.db'
wf_uuid = '1249335e-7692-4751-8da2-efcbb5024429'
e = Expunge(connString, wf_uuid)
e.expunge()
All children/grand-children/etc information and associated
workflows will be removed.
"""
def __init__(self, connString, wf_uuid):
"""
Init object
@type connString: string
@param connString: SQLAlchemy connection string - REQUIRED
@type wf_uuid: string
@param wf_uuid: The wf_uuid string of the workflow to remove
along with associated data from the database
"""
DoesLogging.__init__(self)
self.log.info('init.start')
SQLAlchemyInit.__init__(self, connString, initializeToPegasusDB)
self._connString = connString
self._wf_uuid = wf_uuid
self.log.info('init.end')
def expunge(self):
"""
Invoke this to remove workflow/information from DB.
"""
#PM-652 do nothing for sqlite
#DB is already rotated in pegasus-monitord
if self._connString.startswith( "sqlite:" ):
return
self.log.info('stampede.expunge.start')
self.session.autoflush=True
# delete main workflow uuid and start cascade
query = self.session.query(Workflow).filter(Workflow.wf_uuid == self._wf_uuid)
try:
wf = query.one()
except orm.exc.NoResultFound, e:
self.log.warn('stampede.expunge', msg='No workflow found with wf_uuid %s - aborting expunge' % self._wf_uuid)
return
root_wf_id = wf.wf_id
# subs = []
# query = self.session.query(Workflow.wf_id).filter(Workflow.root_wf_id == root_wf_id).filter(Workflow.wf_id != root_wf_id)
# for row in query:
# subs.append(row[0])
# for sub in subs:
# query = self.session.query(Workflow).filter(Workflow.wf_id == sub)
# subwf = query.one()
# self.log.info('expunge', msg='Expunging sub-workflow: %s' % subwf.wf_uuid)
# i = time.time()
# self.session.delete(subwf)
# self.session.flush()
# self.session.commit()
# self.log.info('expunge', msg='Flush took: %f seconds' % (time.time() - i))
self.log.info('expunge', msg='Flushing top-level workflow: %s' % wf.wf_uuid)
i = time.time()
self.session.delete(wf)
self.session.flush()
self.session.commit()
self.log.info('expunge', msg=' Flush took: %f seconds' % (time.time() - i) )
# Disable autoflush
self.session.autoflush=False
pass
from Pegasus.netlogger.analysis.schema.stampede_dashboard_schema import *
class DashboardExpunge(Expunge):
"""
Utility class to expunge a workflow and the associated data from
a stampede schema database in the case of running with the replay
option or a similar situation.
The wf_uuid that is passed into the constructor MUST be the
"top-level" workflow the user wants to delete. Which is to
say if the wf_uuid is a the child of another workflow, then
only the data associated with that workflow will be deleted.
Any parent or sibling workflows will be left untouched.
Usage::
from Pegasus.netlogger.analysis.workflow.util import Expunge
connString = 'sqlite:///pegasusMontage.db'
wf_uuid = '1249335e-7692-4751-8da2-efcbb5024429'
e = Expunge(connString, wf_uuid)
e.expunge()
All children/grand-children/etc information and associated
workflows will be removed.
"""
def __init__(self, connString, wf_uuid):
"""
Init object
@type connString: string
@param connString: SQLAlchemy connection string - REQUIRED
@type wf_uuid: string
@param wf_uuid: The wf_uuid string of the workflow to remove
along with associated data from the database
"""
DoesLogging.__init__(self)
self.log.info('init.start')
SQLAlchemyInit.__init__(self, connString, initializeToDashboardDB )
self._wf_uuid = wf_uuid
self.log.info('init.end')
def expunge(self):
"""
Invoke this to remove workflow/information from DB.
"""
self.log.info('dashboard.expunge.start')
self.session.autoflush=True
# delete main workflow uuid and start cascade
query = self.session.query(DashboardWorkflow).filter(DashboardWorkflow.wf_uuid == self._wf_uuid)
try:
wf = query.one()
except orm.exc.NoResultFound, e:
self.log.warn('dashboard.expunge', msg='No workflow found with wf_uuid %s - aborting expunge' % self._wf_uuid)
return
query = self.session.query( DashboardWorkflowstate ).filter( DashboardWorkflowstate.wf_id == wf.wf_id )
try:
states = query.all()
except orm.exc.NoResultFound, e:
self.log.warn('dashboard.expunge', msg='No dashboard workflow state found with workflow found with wf_uuid %s - aborting expunge' % self._wf_uuid)
return
# expunge all the associated workflow states first
for state in states:
self.log.info('dashboard.expunge', msg='Expunging workflow state for workflow : %s' % wf.wf_id )
i = time.time()
self.session.delete(state)
self.session.flush()
self.session.commit()
self.log.info('dashboard.expunge', msg='Flush took: %f seconds' % (time.time() - i))
# expunge the workflow from the workflow table
self.log.info('dashboard.expunge', msg='Flushing workflow from workflow table: %s' % wf.wf_uuid)
i = time.time()
self.session.delete(wf)
self.session.flush()
self.session.commit()
self.log.info('dashboard.expunge', msg=' Flush took: %f seconds' % (time.time() - i) )
# Disable autoflush
self.session.autoflush=False
pass
if __name__ == '__main__':
pass
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