/usr/bin/pegasus-plots is in pegasus-wms 4.4.0+dfsg-7.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
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import os
import re
import sys
import logging
import optparse
import commands
import subprocess
import shutil
from datetime import timedelta
import traceback
# Initialize logging object
logger = logging.getLogger()
# Set default level to INFO
logger.setLevel(logging.INFO)
# Use pegasus-config to find our lib path
bin_dir = os.path.normpath(os.path.join(os.path.dirname(sys.argv[0])))
pegasus_config = os.path.join(bin_dir, "pegasus-config") + " --noeoln --python"
lib_dir = subprocess.Popen(pegasus_config, stdout=subprocess.PIPE, shell=True).communicate()[0]
pegasus_config = os.path.join(bin_dir, "pegasus-config") + " --noeoln --python-externals"
lib_ext_dir = subprocess.Popen(pegasus_config, stdout=subprocess.PIPE, shell=True).communicate()[0]
# share and javascript dirs are derived from bin dir
share_dir = os.path.normpath(os.path.join(bin_dir, "../share/pegasus"))
javascript_dir = os.path.normpath(os.path.join(lib_dir, "../../pegasus/javascript"))
# Insert this directory in our search path
os.sys.path.insert(0, lib_ext_dir)
os.sys.path.insert(0, lib_dir)
import Pegasus.common
from Pegasus.plots_stats import utils as plot_utils
from Pegasus.plots_stats.plots import populate
from Pegasus.plots_stats.plots import pegasus_gantt
from Pegasus.plots_stats.plots import pegasus_host_over_time
from Pegasus.plots_stats.plots import pegasus_breakdown
from Pegasus.plots_stats.plots import pegasus_time
from Pegasus.tools import utils
# Regular expressions
re_parse_property = re.compile(r'([^:= \t]+)\s*[:=]?\s*(.*)')
# Global variables----
prog_base = os.path.split(sys.argv[0])[1] # Name of this program
NEW_LINE_STR ="\n"
MAX_GRAPH_NODES = 100
calc_dax_graph = False
calc_dag_graph = False
calc_gantt_chart = False
calc_host_chart = False
calc_time_chart = False
calc_breakdown_chart = False
max_graph_nodes = MAX_GRAPH_NODES
DEFAULT_OUTPUT_DIR = "plots"
pegasus_env_path = {
'pegasus_bin_dir' : bin_dir,
'pegasus_javascript_dir': javascript_dir,
'pegasus_share_dir' : share_dir
}
def setup_logger(level_str):
"""
Sets the logging level
@param level_str logging level
"""
level_str = level_str.lower()
if level_str == "debug":
logger.setLevel(logging.DEBUG)
if level_str == "warning":
logger.setLevel(logging.WARNING)
if level_str == "error":
logger.setLevel(logging.ERROR)
if level_str == "info":
logger.setLevel(logging.INFO)
populate.setup_logger(level_str)
return
def setup(output_dir):
"""
Set up the pegaus plots.
@param output_dir output directory path
"""
src_img_path = os.path.join(pegasus_share_dir, "plots/images/common/")
dest_img_path = os.path.join(output_dir, "images/")
if os.path.isdir(dest_img_path):
logger.warning("Image directory exists. Deleting... " + dest_img_path)
try:
shutil.rmtree(dest_img_path)
except:
logger.error("Unable to remove image directory." + dest_img_path)
sys.exit(1)
# Need to create the path in case it doesn't exist yet when running under Python < 2.5
if sys.version_info < (2, 5):
if not os.path.isdir(output_dir):
os.makedirs(output_dir)
shutil.copytree (src_img_path, dest_img_path)
def generate_dag_graph(wf_info, output_dir):
"""
Generates the DAG graph
@wf_info WorkflowInfo object reference
@output_dir the output directory path
"""
dag_file_path = wf_info.dag_file_path
title = str(wf_info.wf_uuid) + " (" + str(wf_info.dax_label) +")"
if dag_file_path is not None:
dag2dot_file_path = os.path.join(pegasus_share_dir, "visualize/dag2dot")
dot_file_path = os.path.join(output_dir, wf_info.wf_uuid + ".dot")
dag_cmd = dag2dot_file_path
dag_cmd += " --output " + dot_file_path
dag_cmd += " " + dag_file_path
logger.debug("Executing command :\n" + dag_cmd)
status, output = commands.getstatusoutput(dag_cmd)
if status == 0:
logger.info("Finished executing command." )
else:
logger.warn("Failed to generate dag graph for workflow " + title)
logger.debug("%s: %d:%s" % (dag_cmd, status, output))
return None
png_file_path = os.path.join(output_dir, wf_info.wf_uuid + ".png")
dot_png_cmd = utils.find_exec("dot")
if dot_png_cmd is None:
logger.warn("dot is not present . Unable to create chart in png format. ")
return None
dot_png_cmd += " -Tpng -o" + png_file_path
dot_png_cmd += " " + dot_file_path
logger.debug("Executing command :\n" + dot_png_cmd)
status, output = commands.getstatusoutput(dot_png_cmd)
if status == 0:
logger.debug("Finished executing command." )
return status
else:
logger.warn("%s: %d:%s" % (dot_png_cmd, status, output))
else:
logger.warn("Unable to find the dag file for workflow " + title)
return None
def generate_dax_graph(wf_info, output_dir, create_dax_files=False):
"""
Generates the DAX graph
@wf_info WorkflowInfo object reference
@output_dir the output directory path
@create_dax_files whether to include files when visualizing dax
"""
dax_file_path = wf_info.dax_file_path
title = str(wf_info.wf_uuid) + " (" + str(wf_info.dax_label) +")"
if dax_file_path is not None:
dax2dot_file_path = os.path.join(pegasus_share_dir, "visualize/dag2dot")
dot_file_path = os.path.join(output_dir, wf_info.wf_uuid + ".dot")
dax_cmd = dax2dot_file_path
dax_cmd +=" --output "+ dot_file_path
if create_dax_files:
dax_cmd += " --files "
dax_cmd += " "+ dax_file_path
logger.debug("Executing command :\n" + dax_cmd)
status, output = commands.getstatusoutput(dax_cmd)
if status == 0:
logger.debug("Finished executing command." )
else:
logger.warn("Failed to generate dax graph for workflow " + title)
logger.debug("%s: %d:%s" % (dax_cmd, status, output))
return None
# Find dot command
dot_png_cmd = utils.find_exec("dot")
if dot_png_cmd is None:
logger.warn("dot is not present . Unable to create chart in png format. ")
return None
png_file_path = os.path.join(output_dir, wf_info.wf_uuid + ".png")
dot_png_cmd +=" -Tpng -o" + png_file_path
dot_png_cmd += " "+ dot_file_path
logger.debug("Executing command :\n" + dot_png_cmd)
status, output = commands.getstatusoutput(dot_png_cmd)
if status == 0:
logger.debug("Finished executing command." )
return status
else:
logger.warn("Failed to generate dax graph in png format for workflow " + wf_info.wf_uuid)
logger.debug("%s: %d:%s" % (dot_png_cmd, status, output))
else:
logger.warn("Unable to find the dax file for workflow " + title)
return None
def create_image_gallery(file_name, wf_uuid_list, wf_parent_uuid_list, uuid_image_map, wf_uuid_label_map, isDax):
"""
Creates the image gallery.
@param file_mame the output file name
@param wf_uuid_list the list of all workflow id's
@param wf_parent_uuid_list the list of parent workflow id's corresponding to each workflow
@param uuid_image_map uuid and image file mapping
@param wf_uuid_label_map uuid and label mapping
@isDax boolean indicating whether it is a dax file or not.
"""
wf_uuid_parent_ref = None
try:
fh = open(file_name, "w")
content = """
<html>
<head>
<style>
.imgbox
{
float:left;
text-align:center;
width:450px;
height:450px;
margin:4px;
margin-bottom:8px;
padding:0px;
}
.thumbnail
{
width:300px;
height:300px;
margin:3px;
}
.box
{
width:450px;
padding:0px;
}
.workflow
{
clear:both;
}
</style>
</head>
<body>
""" + plot_utils.create_home_button() + """
<center>
"""
if isDax:
content += "<h3>DAX Graph </h3>" + NEW_LINE_STR
else:
content += "<h3>DAG Graph </h3>"+ NEW_LINE_STR
for index in range(len(wf_uuid_list)):
uuid = wf_uuid_list[index]
image = uuid_image_map[index]
label = wf_uuid_label_map[index]
parent_uuid =wf_parent_uuid_list[index]
if parent_uuid is None:
content += "<h3 class= 'workflow'> Top level workflow (" + uuid + ")</h3>"
else:
if parent_uuid != wf_uuid_parent_ref:
wf_uuid_parent_ref = parent_uuid
content += "<h3 class= 'workflow'> Sub workflow's of workflow (" + parent_uuid + ")</h3>"
content += "<div class ='imgbox' >"
if image is None:
content += "<a class= 'thumbnail' href ='#'>\n"
content +="<img src ='images/not_available.jpg' height='300px' width='300px'>\n"
content +="</img>\n</a>"
content +="<div class ='box'>\n"
content += "wf_uuid :" + uuid +"<br/>"
if isDax:
content+= "dax label :" + label
else:
if image is not None:
content += "dag label :" + image
content +="</div>"
else:
content +="<a class= 'thumbnail' href ='" + image + "'>"
content +="<img src ='" + image + "' height='300px' width='300px'>"
content +="</img>\n</a>\n"
content +="<div class ='box'>\n"
content += "wf_uuid :" + uuid +"<br/>"
if isDax:
content += "dax label :" + label
else:
if label is not None:
content += "dag label :" + label
content += "</div>"
content += "</div>"
content += """
</center>
</body>
</html>
"""
fh.write( content)
except IOError:
logger.error("Unable to write to file " + data_file)
sys.exit(1)
else:
fh.close()
def createOuterhtml(wf_stats, wf_info, submit_dir, output_dir, log_level):
"""
Generates the outer html file which links to all the charts and graph
@param wf_info WorkflowInfo object reference
@param wf_stats StampedeStatistics reference
@param submit_dir submit directory
@param output_dir the output directory path
@param log_level logging level
"""
wf_uuid = wf_info.wf_uuid
title = str(wf_info.wf_uuid) + " (" + str(wf_info.dax_label) + ")"
data_file = os.path.join(output_dir, "index.html")
gantt_chart_parent_file = os.path.join("gantt_chart/" + wf_uuid + ".html")
dag_graph_parent_file = os.path.join("dag_graph/" + wf_uuid + ".html")
dax_graph_parent_file = os.path.join("dax_graph/" + wf_uuid + ".html")
host_chart_parent_file = os.path.join("host_chart/" + wf_uuid + ".html")
breakdown_chart_parent_file = os.path.join("breakdown_chart/" + wf_uuid + ".html")
time_summary_output_dir = None
breakdown_summary_output_dir = None
if calc_time_chart:
time_summary_output_dir = output_dir
pegasus_time.setup(submit_dir, time_summary_output_dir, pegasus_env_path, log_level)
if calc_breakdown_chart:
breakdown_summary_output_dir = output_dir
pegasus_breakdown.setup(submit_dir, breakdown_summary_output_dir, pegasus_env_path, log_level)
try:
fh = open(data_file, "w")
content = """
<html>
<head>
<style type ='text/css'>
#breakdown_chart{
border:2px solid orange;
}
#breakdown_chart_footer_div{
border:2px solid #C35617;
border-top-style:none;
}
#time_chart{
border:2px solid orange;
}
#time_chart_footer_div{
border:2px solid #C35617;
border-top-style:none;
}
#breakdown_chart_legend_div{
color:#0066CC;
}
.header_level1{
font-family:"Times New Roman", Times, serif;
font-size:36px;
}
.header_level2{
font-family:"Times New Roman", Times, serif;
font-size:30px;
padding-top:25px;
}
</style>
</head>
<body>
<center>
<div class ='header_level1'>Pegasus plots </div>
"""
if calc_time_chart or calc_breakdown_chart:
content += """
<script type='text/javascript' src='js/protovis-r3.2.js'>
</script>
"""
if calc_gantt_chart :
content += "<a href ='" + gantt_chart_parent_file + "'>Workflow Execution Gantt Chart (Per workflow)</a><br/>" + NEW_LINE_STR
if calc_host_chart :
content += "<a href ='" + host_chart_parent_file + "'>Host Over Time Chart (Per workflow)</a><br/>" + NEW_LINE_STR
if calc_breakdown_chart:
content += """<a href ='#breakdown_chart_div'>Invocation Breakdown Chart (Across workflows)</a><br/>""" + NEW_LINE_STR
content += "<a href ='" + breakdown_chart_parent_file + "'>Invocation Breakdown Chart (Per workflow)</a><br/>" + NEW_LINE_STR
if calc_time_chart :
content += """<a href ="#time_chart_div">Time Chart (Across workflows)</a><br/>""" + NEW_LINE_STR
if calc_dax_graph :
content += "<a href ='" + dax_graph_parent_file + "'>DAX graph</a><br/>" + NEW_LINE_STR
if calc_dag_graph :
content += "<a href ='" + dag_graph_parent_file + "'>DAG graph</a><br/>" + NEW_LINE_STR
content += """<a href ='#env_div'> Workflow environment</a><br/><br/><br/>""" + NEW_LINE_STR
content += """<div id ='env_div' class ='header_level2'> Workflow environment </div>"""
content += plot_utils.print_property_table(wf_info.wf_env, False, ":")
if calc_breakdown_chart:
content += """
<div id ='breakdown_chart_div' class ='header_level2'> Invocation breakdown chart (Across workflows) </div>
"""
populate.populate_transformation_details(wf_stats, wf_info)
logger.debug("Generating breakdown chart for the workflow " + title + " ... ")
content += pegasus_breakdown.create_breakdown_plot(wf_info, breakdown_summary_output_dir)
if calc_time_chart :
populate.populate_time_details(wf_stats, wf_info)
logger.debug("Generating time chart for the workflow " + title + " ... ")
content += """
<div id ='time_chart_div' class ='header_level2'> Time chart (Across workflows) </div>
"""
content += pegasus_time.create_time_plot(wf_info, time_summary_output_dir)
content += """
</center>
</body>
</html>
"""
fh.write(content)
plots_output = NEW_LINE_STR + "SUMMARY".center(100, '*')
plots_output += NEW_LINE_STR
plots_output += NEW_LINE_STR
plots_output += "Graphs and charts generated by pegasus-plots can be viewed by opening the generated html file in the web browser : \n" + data_file
plots_output += NEW_LINE_STR
plots_output += NEW_LINE_STR
plots_output += "".center(100, '*')
print plots_output
except IOError:
logger.error("Unable to write to file " + data_file)
sys.exit(1)
else:
fh.close()
def create_charts(submit_dir, output_dir, config_properties, log_level, create_dax_files=False):
"""
Generates all the graphs and charts
@submit_dir submit directory pathd
@output_dir the output directory path
@config_properties path to the pegasus property file
@log_level logging level
@create_dax_files whether to include files when visualizing dax
"""
wf_uuid_dax_image = []
wf_uuid_dax_label = []
wf_uuid_dag_image = []
wf_uuid_dag_label = []
wf_uuid_parent = []
populate.setup(submit_dir, config_properties)
wf_uuid_list = populate.get_workflows_uuid()
if len(wf_uuid_list) == 0:
logger.error("Unable to populate workflow information.")
if calc_gantt_chart:
gantt_chart_output_dir = os.path.join(output_dir, "gantt_chart")
pegasus_gantt.setup(submit_dir, gantt_chart_output_dir, pegasus_env_path, log_level)
if calc_host_chart:
host_chart_output_dir = os.path.join(output_dir, "host_chart")
pegasus_host_over_time.setup(submit_dir, host_chart_output_dir, pegasus_env_path, log_level)
if calc_breakdown_chart:
breakdown_chart_output_dir = os.path.join(output_dir, "breakdown_chart")
pegasus_breakdown.setup(submit_dir, breakdown_chart_output_dir, pegasus_env_path, log_level)
if calc_dag_graph:
dag_graph_output_dir = os.path.join(output_dir, "dag_graph")
setup(dag_graph_output_dir)
if calc_dax_graph :
dax_graph_output_dir = os.path.join(output_dir, "dax_graph")
setup(dax_graph_output_dir)
for wf_uuid in wf_uuid_list:
wf_stats, wf_info = populate.populate_chart(wf_uuid)
title = str(wf_uuid) + " (" + str(wf_info.dax_label) +")"
logger.info("Generating graphs/charts for the workflow " + title +" ... ")
if calc_gantt_chart or calc_host_chart:
populate.populate_job_instance_details(wf_stats, wf_info)
wf_uuid_parent.append(wf_info.parent_wf_uuid)
if calc_gantt_chart :
logger.debug("Generating gantt chart for the workflow " + title +" ... ")
pegasus_gantt.generate_chart(wf_info)
if calc_host_chart :
logger.debug("Generating host chart for the workflow " + title +" ... ")
pegasus_host_over_time.generate_chart(wf_info)
if calc_breakdown_chart:
populate.populate_transformation_details(wf_stats, wf_info)
logger.debug("Generating breakdown chart for the workflow " + title +" ... ")
pegasus_breakdown.generate_chart(wf_info)
if calc_dag_graph :
populate.populate_job_details(wf_stats, wf_info)
if wf_info.total_jobs <= max_graph_nodes:
logger.debug("Generating dag graph for the workflow " + title +" ... ")
if generate_dag_graph(wf_info, dag_graph_output_dir) is None:
wf_uuid_dag_image.append(None)
else:
wf_uuid_dag_image.append(wf_info.wf_uuid+".png")
else:
wf_uuid_dag_image.append(None)
logger.info("Dag graph for workflow '" + title + "' was not created because number of jobs is more than the maximum graph node generation limit ")
wf_uuid_dag_label.append( wf_info.dag_label)
if calc_dax_graph :
populate.populate_task_details(wf_stats, wf_info)
if wf_info.total_tasks <= max_graph_nodes:
logger.debug("Generating dax graph for the workflow " + title +" ... ")
if generate_dax_graph(wf_info, dax_graph_output_dir,create_dax_files) is None:
wf_uuid_dax_image.append(None)
else:
wf_uuid_dax_image.append(wf_info.wf_uuid+".png")
else:
wf_uuid_dax_image.append(None)
logger.info("Dax graph for workflow '" + title +"' was not created because number of tasks is more than the maximum graph node generation limit ")
wf_uuid_dax_label.append(wf_info.dax_label)
wf_stats.close()
wf_stats = None
wf_info = None
root_wf_stats, root_wf_info = populate.populate_chart(wf_uuid_list[0], True)
if calc_dax_graph :
data_file = os.path.join(dax_graph_output_dir, wf_uuid_list[0] + ".html")
create_image_gallery(data_file, wf_uuid_list, wf_uuid_parent, wf_uuid_dax_image, wf_uuid_dax_label, True )
if calc_dag_graph :
data_file = os.path.join(dag_graph_output_dir, wf_uuid_list[0] + ".html")
create_image_gallery(data_file, wf_uuid_list, wf_uuid_parent, wf_uuid_dag_image, wf_uuid_dag_label, False )
createOuterhtml(root_wf_stats, root_wf_info, submit_dir, output_dir, log_level)
root_wf_stats.close()
return
def set_plotting_level(plots_level):
"""
Sets the plotting level
@param plot_level
"""
global calc_dax_graph
global calc_dag_graph
global calc_gantt_chart
global calc_host_chart
global calc_time_chart
global calc_breakdown_chart
if plots_level =='all':
calc_dax_graph = True
calc_dag_graph = True
calc_gantt_chart = True
calc_host_chart = True
calc_time_chart = True
calc_breakdown_chart = True
elif plots_level =='all_charts':
calc_gantt_chart = True
calc_host_chart = True
calc_time_chart = True
calc_breakdown_chart = True
elif plots_level =='all_graphs':
calc_dax_graph = True
calc_dag_graph = True
elif plots_level == 'dax_graph':
calc_dax_graph = True
elif plots_level == 'dag_graph':
calc_dag_graph = True
elif plots_level == 'gantt_chart':
calc_gantt_chart = True
elif plots_level == 'host_chart':
calc_host_chart = True
elif plots_level == 'time_chart':
calc_time_chart = True
else:
calc_breakdown_chart = True
# ---------main----------------------------------------------------------------------------
def main():
# Configure command line option parser
prog_usage = prog_base +" [options] SUBMIT DIRECTORY"
parser = optparse.OptionParser(usage=prog_usage)
parser.add_option("-o", "--output", action = "store", dest = "output_dir",
help = "writes the output to given directory.")
parser.add_option("-c", "--conf", action = "store", type = "string", dest = "config_properties",
help = "specifies the properties file to use. This option overrides all other property files.")
parser.add_option("-m", "--max-graph-nodes", action = "store", type = "int", dest = "max_graph_nodes",
help = "Maximum limit on the number of tasks/jobs in the dax/dag upto which the graph should be generated; Default value is 100")
parser.add_option("-p", "--plotting-level", action = "store", dest = "plotting_level",
choices=['all', 'all_charts', 'all_graphs', 'dax_graph', 'dag_graph', 'gantt_chart', 'host_chart', 'time_chart', 'breakdown_chart'],
help = "specifies the chart and graphs to generate. Valid levels are: all, all_charts, all_graphs, dax_graph,\
dag_graph, gantt_chart, host_chart, time_chart, breakdown_chart; Default is all_charts.")
parser.add_option("-i", "--ignore-db-inconsistency", action = "store_const", const = 0, dest = "ignore_db_inconsistency",
help = "turn off the check for db consistency")
parser.add_option("-v", "--verbose", action="count", default=0, dest="verbose",
help="Increase verbosity, repeatable")
parser.add_option("-q", "--quiet", action="count", default=0, dest="quiet",
help="Decrease verbosity, repeatable")
parser.add_option("-f", "--files", action="store_true",
dest="files", default=False,
help="Include files. This option is only valid for DAX files. [default: false]")
# Parse command line options
(options, args) = parser.parse_args()
if len(args) > 1:
parser.error("Invalid argument")
sys.exit(1)
if len(args) < 1:
submit_dir = os.getcwd()
else:
submit_dir = os.path.abspath(args[0])
# Copy options from the command line parser
log_level = 1
log_level_str = "info"
log_level += (options.verbose - options.quiet)
if log_level <= 0:
log_level_str = "error"
elif log_level == 1:
log_level_str = "warning"
elif log_level == 2:
log_level_str = "info"
elif log_level >= 3:
log_level_str = "debug"
setup_logger(log_level_str)
logger.info(prog_base + " : initializing...")
if options.ignore_db_inconsistency is None:
if not utils.loading_completed(submit_dir):
if utils.monitoring_running(submit_dir):
logger.warning("pegasus-monitord still running. Please wait for it to complete. ")
else:
logger.warning("Please run pegasus monitord in replay mode. ")
sys.exit(1)
else:
logger.warning("The tool is meant to be run after the completion of workflow run.")
if options.plotting_level is not None:
plotting_level = options.plotting_level
else:
plotting_level = 'all_charts'
set_plotting_level(plotting_level)
if options.output_dir is not None:
output_dir = options.output_dir
else :
output_dir = os.path.join(submit_dir, DEFAULT_OUTPUT_DIR)
utils.create_directory(output_dir, True)
if options.max_graph_nodes is not None:
global max_graph_nodes
max_graph_nodes = options.max_graph_nodes
try:
create_charts(submit_dir, output_dir, options.config_properties, log_level_str, options.files)
except SystemExit:
sys.exit(1)
except:
logger.warning(traceback.format_exc())
sys.exit(1)
sys.exit(0)
if __name__ == '__main__':
main()
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