/usr/share/arc/scan-condor-job is in nordugrid-arc-arex 5.4.2-1build1.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
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progname=$(basename "$0")
LRMS=Condor # for use in log messages
# ARC1 passes first the config file.
if [ "$1" = "--config" ]; then shift; ARC_CONFIG=$1; shift; fi
basedir=`dirname $0`
basedir=`cd $basedir > /dev/null && pwd` || exit $?
libexecdir="${ARC_LOCATION:-/usr}/lib/arc/"
pkgdatadir="$basedir"
. "${pkgdatadir}/configure-condor-env.sh" || exit $?
. "${pkgdatadir}/scan_common.sh" || exit $?
# Log system performance
if [ ! -z "$perflogdir" ]; then
perflog_common "$perflogdir" "$CONFIG_controldir"
fi
#############################################################################
########################## LRMS specific functions ##########################
#############################################################################
#
# Should print the id's of all jobs in the LRMS, one per line. If left
# unimplemented then lrms_job_finished must be implemented. If it's
# implemented then implementing lrms_job_finished is optional.
#
lrms_list_jobs() {
LIST_IMPLEMENTED=
}
#
# Should return 0 only if the job is not in the LRMS. The job's LRMS id is
# stored in the lrmsid variable. It's called for all grid jobs that are in
# INLRMS and CANCELING states and whose LRMS id was not listed by
# lrms_list_jobs. STDOUT and STDERR are redirected to job.$gridid.error.
#
lrms_job_finished() {
return 0
}
#
# Should attempt to collect accounting info from LRMS for a job. The job's
# LRMS id is stored in the lrmsid variable. This function will be called after
# the job has left the LRMS. Diagnostics might not be available right after
# the job has finished and therefore a retry mechanism is implemented. If more
# time is needed, the function should signal this by returning without setting
# the LRMSExitcode variable. In this case it will be called again on the next
# run on scan-*-jobs, but not more than $maxwait times for any given job. If
# it sets LRMSExitcode, or $maxwait retries have already been done, then
# lrms_last_call will be called shortly afterwards and the job declared done.
# STDOUT and STDERR are redirected to job.$gridid.errors. The interval between
# successive runs of scan-*-jobs is controlled by $wakeupperiod.
# Input variables:
# * gridid
# * lrmsid
# * sessiondir
# * uid -- numerical unix ID of the user owning the job
# The following variables are initialized with values read from
# $sessiondir.diag. All except exitcode are expected to be updated by this
# function:
# * exitcode -- It's the exitcode of the user's executable, as reported by
# the job wrapper. Do not change.
# * nodename -- may contain multiple lines, one execution node per line
# * WallTime -- in seconds
# * UserTime -- in seconds
# * KernelTime -- in seconds
# * TotalMemory -- in kB
# * ResidentMemory -- in kB
# * LRMSStartTime -- in Mds time format, UTC time zone (20091201140049Z)
# * LRMSEndTime -- in Mds time format, UTC time zone (20091201140049Z)
# Output variables:
# * LRMSExitcode -- as reported by the LRMS. It will be saved to the .diag file
# * LRMSMessage -- any clues obtained from the LRMS about job failure. It
# content will be addedd to .lrms_done in case LRMSExitcode is not 0.
#
lrms_get_accounting() {
ACCT_IMPLEMENTED=
LRMSExitcode=${exitcode:--1}
}
#
# Called just before uptading .diag and writing the .lrms_done file. STDOUT and
# STDERR are redirected to job.$gridid.error. Can be left as is.
# Input/Output variables:
# * the same as for lrms_get_accounting
# * any variables set in lrms_get_accounting are visible here
#
lrms_last_call() {
[ -n "$LRMSExitcode" ] \
|| log "LRMS exit status not available for job $gridid ($LRMS id: $lrmsid)"
[ -n "$ACCT_IMPLEMENTED" ] || LRMSExitcode=
# Suspect killing due to resource limit exceeded only if exitcode is
# missing or is > 128 (as in the case of a shell killed by a signal)
if [ -z "$exitcode" ] || [ "$exitcode" -gt 128 ]; then
read_grami; autodetect_overlimit
fi
}
#############################################################################
#
# scan-*-jobs has STDOUT redirected to /dev/null and STDERR redirected to
# job.helper..errors
#
log () { echo "[`date +%Y-%m-%d\ %T`] $progname: $*" 1>&2; }
#
# Attempts to switch to uid passed as the first argument and then runs the
# commands passed as the second argument in a shell. The remaining arguments
# are passed as arguments to the shell. No warning is given in case switching
# uid is not possible.
#
do_as_uid () {
test $# -ge 2 || { log "do_as_uid requires 2 arguments"; return 1; }
script='use English;
my ($uid, @args) = @ARGV;
if ( $UID == 0 ) {
eval { $UID = $uid };
print STDERR "Cannot switch to uid($UID): $@\n" if $@;
}
system("/bin/sh","-c",@args);
exit 0 if $? eq 0;
exit ($?>>8||128+($?&127));
'
/usr/bin/perl -we "$script" "$@"
}
#
# Reads a line from STDIN and prints integer part on STDOUT.
# If not a valid number, prints nothing and returns 1
#
to_integer() {
/usr/bin/perl -we 'chomp(my $line = <>);
exit 0 if $line eq "";
if ( $line =~ m/^(\d*)(?:\.\d+)?$/ ) {
print $1 || 0;
} else {
exit 1;
}'
}
#
# Input variables:
# * sessiondir
# * uid
# Output variables:
# * diagstring -- the whole contents of .diag
# * nodename
# * WallTime
# * UserTime
# * KernelTime
# * TotalMemory
# * ResidentMemory
# * LRMSStartTime
# * LRMSEndTime
# * exitcode
#
job_read_diag() {
[ -n "$uid" ] && [ -n "$sessiondir" ] \
|| { log "job_read_diag requires the following to be set: uid sessiondir"; return 1; }
diagfile=$sessiondir.diag;
[ -f "$diagfile" ] || { log "diag file not found at: $sessiondir.diag"; return 1; }
diagstring=$(do_as_uid $uid "tail -n 1000 '$diagfile'")
[ $? = 0 ] || { log "cannot read diag file at: $diagfile"; return 1; }
nodename=$(echo "$diagstring" | sed -n 's/^nodename=\(..*\)/\1/p')
WallTime=$(echo "$diagstring" | sed -n 's/^WallTime=\([0-9.]*\)s/\1/p' | tail -n 1)
UserTime=$(echo "$diagstring" | sed -n 's/^UserTime=\([0-9.]*\)s/\1/p' | tail -n 1)
KernelTime=$(echo "$diagstring" | sed -n 's/^KernelTime=\([0-9.]*\)s/\1/p' | tail -n 1)
TotalMemory=$(echo "$diagstring" | sed -n 's/^AverageTotalMemory=\([0-9.]*\)kB/\1/p' | tail -n 1)
ResidentMemory=$(echo "$diagstring" | sed -n 's/^AverageResidentMemory=\([0-9.]*\)kB/\1/p' | tail -n 1)
LRMSStartTime=$(echo "$diagstring" | sed -n 's/^LRMSStartTime=\([0-9][0-9]*Z\)/\1/p' | tail -n 1)
LRMSEndTime=$(echo "$diagstring" | sed -n 's/^LRMSEndTime=\([0-9][0-9]*Z\)/\1/p' | tail -n 1)
exitcode=$(echo "$diagstring" | sed -n 's/^exitcode=\([0-9]*\)/\1/p' | tail -n 1)
for key in nodename WallTime UserTime KernelTime AverageTotalMemory AverageResidentMemory \
exitcode LRMSStartTime LRMSEndTime LRMSExitcode LRMSMessage; do
diagstring=$(echo "$diagstring" | grep -v "^$key=")
done
# These are set on the font-end. Not to be overwritten
diagstring=$(echo "$diagstring" | grep -v "^frontend_")
diagstring=$(echo "$diagstring" | grep -v "^Processors=")
}
#
# Input variables:
# * sessiondir
# * uid
# * LRMSExitcode
# * LRMSMessage
# + all output variables from job_read_diag
#
job_write_diag() {
[ -n "$uid" ] && [ -n "$sessiondir" ] \
|| { log "job_write_diag requires the following to be set: uid sessiondir"; return 1; }
diagfile=$sessiondir.diag;
{ echo "$diagstring" && echo
[ -n "$nodename" ] && echo "$nodename" | sed -n 's/^\(..*\)/nodename=\1/p'
[ -n "$RequestCpus" ] && echo "Processors=${RequestCpus}"
[ -n "$WallTime" ] && echo "WallTime=${WallTime}s"
[ -n "$UserTime" ] && echo "UserTime=${UserTime}s"
[ -n "$KernelTime" ] && echo "KernelTime=${KernelTime}s"
[ -n "$TotalMemory" ] && echo "AverageTotalMemory=${TotalMemory}kB"
[ -n "$ResidentMemory" ] && echo "AverageResidentMemory=${ResidentMemory}kB"
[ -n "$LRMSStartTime" ] && echo "LRMSStartTime=$LRMSStartTime"
[ -n "$LRMSEndTime" ] && echo "LRMSEndTime=$LRMSEndTime"
[ -n "$LRMSMessage" ] && echo "LRMSMessage=$LRMSMessage"
[ -n "$LRMSExitcode" ] && echo "LRMSExitcode=$LRMSExitcode"
[ -n "$exitcode" ] && echo "exitcode=$exitcode"
} | do_as_uid $uid "cat > '$diagfile'"
[ $? = 0 ] || { log "cannot write diag file at: $diagfile"; return 1; }
}
# Input variables
# * gridid
# Output variables:
# * ReqWallTime
# * ReqCPUTime
# * ReqTotalMemory
read_grami() {
gramifile="job.$gridid.grami"
[ -f "$gramifile" ] || { log "grami file not found: $PWD/$gramifile"; return 1; }
ReqWallTime=$(sed -n "s/^joboption_walltime=//p" "$gramifile" | tail -n 1)
ReqCPUTime=$(sed -n "s/^joboption_cputime=//p" "$gramifile" | tail -n 1)
ReqTotalMemory=$(sed -n "s/^joboption_memory=//p" "$gramifile" | tail -n 1)
ReqWallTime=$(echo $ReqWallTime | to_integer) || log "joboption_walltime not a number"
ReqCPUTime=$(echo $ReqCPUTime | to_integer) || log "joboption_cputime not a number"
ReqTotalMemory=$(echo $ReqTotalMemory | to_integer) || log "joboption_memory not a number"
# convert MB to KB
[ -n "$ReqTotalMemory" ] && ReqTotalMemory=$(( $ReqTotalMemory * 1024 ))
log "---- Requested resources specified in grami file ----"
[ -n "$ReqWallTime" ] && log "Requested walltime: $ReqWallTime seconds"
[ -n "$ReqCPUTime" ] && log "Requested cputime: $ReqCPUTime seconds"
[ -n "$ReqTotalMemory" ] && log "Requested memory: $(( $ReqTotalMemory / 1024 )) MB"
log "-----------------------------------------------------"
}
#
# Can be used from lrms_get_accounting() to guess whether the job was killed due to
# an exceeded resource limit and set LRMSMessage accordingly.
# Input variables
# * gridid
# * uid
# * ReqWallTime
# * ReqCPUTime
# * ReqTotalMemory
# * WallTime
# * UserTime
# * KernelTime
# * TotalMemory
# * ResidentMemory
# * exitcode
# * LRMSExitcode
# * LRMSMessage
# Output variables:
# * overlimit (if set, then one of memory cputime walltime )
#
autodetect_overlimit() {
# round to integers
wallt=$(echo $WallTime | to_integer) || log "WallTime not a number"
usert=$(echo $UserTime | to_integer) || log "UserTime not a number"
kernelt=$(echo $KernelTime | to_integer) || log "KernelTime not a number"
totalmem=$(echo $TotalMemory | to_integer) || log "TotalMemory not a number"
residentmem=$(echo $ResidentMemory | to_integer) || log "ResidentMemory not a number"
cput=$(( ${usert:-0} + ${kernelt:-0} ))
if [ -n "$cput" ] && [ "$cput" -gt 0 ] \
&& [ -n "$ReqCPUTime" ] && [ "$ReqCPUTime" -gt 0 ] \
&& [ $(( 100 * $cput / $ReqCPUTime )) -gt 95 ]; then
overlimit="cputime"
fi
if [ -n "$wallt" ] && [ "$wallt" -gt 0 ] \
&& [ -n "$ReqWallTime" ] && [ "$ReqWallTime" -gt 0 ] \
&& [ $(( 100 * $wallt / $ReqWallTime )) -gt 95 ]; then
overlimit="walltime"
fi
if [ -n "$totalmem" ] && [ "$totalmem" -gt 0 ] \
&& [ -n "$ReqTotalMemory" ] && [ "$ReqTotalMemory" -gt 0 ] \
&& [ $(( 100 * $totalmem / $ReqTotalMemory )) -gt 95 ]; then
overlimit="memory"
fi
if [ -n "$residentmem" ] && [ "$residentmem" -gt 0 ] \
&& [ -n "$ReqTotalMemory" ] && [ "$ReqTotalMemory" -gt 0 ] \
&& [ $(( 100 * $residentmem / $ReqTotalMemory )) -gt 95 ]; then
overlimit="memory"
fi
[ -n "$overlimit" ] && log "Job have likely hit $overlimit limit"
}
#
# Returns 0 at most maxwait calls for any given gridid. Returns 1 on
# further calls or if an error has occured.
#
job_canwait() {
[ -n "$gridid" ] && [ -n "$maxwait" ] \
|| { log "job_canwait requires the following to be set: gridid, maxwait"; return 1; }
countfile=job.$gridid.lrms_job
if [ ! -f "$countfile" ]; then
echo "1" > "$countfile" || { log "cannot write count file: $PWD/$countfile"; return 1; }
else
count=$(head -n 1 "$countfile") || { log "cannot read count file: $PWD/$countfile"; return 1; }
[ -z "$count" ] && { log "empty count file: $PWD/$countfile"; return 1; }
dummy=$(echo "$count" | grep -v '[0-9]') && { log "not an integer in count file: $PWD/$countfile"; return 1; }
[ "$count" -lt "$maxwait" ] || { rm -f "$countfile"; return 1; }
echo "$(( $count + 1 ))" > "$countfile" || { log "cannot write count file: $PWD/$countfile"; return 1; }
fi
return 0
}
#
# Append .comment (containing STDOUT & STDERR of the job wrapper) to .errors
# Input variables:
# * uid
# * sessiondir
job_print_comment() {
[ -n "$uid" ] && [ -n "$sessiondir" ] \
|| { log "job_print_comment requires the following to be set: uid, sessiondir"; return 1; }
commentfile=$sessiondir.comment
[ -f "$commentfile" ] && do_as_uid "$uid" "
echo '--------- Contents of output stream forwarded by $LRMS ------------'
cat '$commentfile'
echo '------------------------- End of output -------------------------'
" || log "failed reading: $commentfile"
}
# In case overlimit is set, tweak what will go into .lrms_done
set_overlimit_message() {
[ -n "$overlimit" ] || return
if [ $overlimit = "cputime" ]; then
LRMSMessage="job killed: cput"
elif [ $overlimit = "walltime" ]; then
LRMSMessage="job killed: wall"
elif [ $overlimit = "memory" ]; then
LRMSMessage="job killed: vmem"
else
log "invalid value overlimit=$overlimit";
return 1
fi
LRMSExitcode=271
}
#
# Input variables:
# * gridid
# * basedir
# * exitcode
# * LRMSExitcode
# * LRMSMessage
# * overlimit
#
job_write_donefile() {
[ -n "$gridid" ] && [ -n "$basedir" ] && [ -n "$LRMS" ] \
|| { log "job_write_donefile requires the following to be set: gridid, basedir, LRMS"; return 1; }
set_overlimit_message
if [ -n "$LRMSMessage" ] && [ "$LRMSExitcode" != 0 ]; then
msg="$LRMSMessage"
else
if [ "$exitcode" = 0 ]; then
if [ -z "$LRMSExitcode" ] || [ "$LRMSExitcode" = 0 ]; then
msg=
else
msg="Job finished properly but $LRMS reported failure"
fi
elif [ -z "$exitcode" ]; then
if [ "$LRMSExitcode" = 0 ]; then LRMSExitcode=-1; fi
msg="Job was killed by $LRMS"
else
if [ "$LRMSExitcode" = 0 ]; then LRMSExitcode=-1; fi
msg="Job failed with exit code $exitcode"
fi
fi
log "${msg:-$LRMS job $lrmsid finished normally}"
donefile=job.$gridid.lrms_done
echo "${LRMSExitcode:--1} $msg" > $donefile || log "failed writing file: $PWD/$donefile"
# wake up GM
"${libexecdir}"/gm-kick "job.$gridid.local"
}
#
# Should check that the job has exited lrms, and then do whatever post-processing is necesarry.
# Called with STDOUT and STDERR redirected to the job.*.errors file.
# Input variables:
# * gridid
# * lrmsid
# * uid
#
process_job() {
[ -n "$gridid" ] && [ -n "$lrmsid" ] && [ -n "$uid" ] && [ -n "$LRMS" ] \
|| { log "process_job requires the following to be set: gridid, lrmsid, uid, LRMS"; return 1; }
lrms_job_finished || return
log "[$(date +%Y-%m-%d\ %T)] $LRMS job $lrmsid has exited"
localfile=job.$gridid.local
sessiondir=$(sed -n 's/^sessiondir=//p' "$localfile" | tail -n 1)
[ -n "$sessiondir" ] || { log "failed reading sessiondir from: $PWD/$localfile"; return 1; }
job_read_diag
lrms_get_accounting
if [ -z "$LRMSExitcode" ] && job_canwait; then
: # Come back again next time
else
rm -f "$countfile"
job_print_comment
lrms_last_call
job_write_diag
job_write_donefile
fi
}
scan_init () {
[ -n "$basedir" ] || { log "basedir must be set"; exit 1; }
[ -n "$LRMS" ] || { log "LRMS must be set"; exit 1; }
LIST_IMPLEMENTED=yes
ACCT_IMPLEMENTED=yes
maxwait=5
wakeupperiod=60
trap 'sleep $wakeupperiod' EXIT TERM
TMPDIR=${TMPDIR:-/tmp}
export TMPDIR
# default is shared sessiondirs
if [ -z "$CONFIG_shared_filesystem" ]; then
CONFIG_shared_filesystem=yes
elif [ "$CONFIG_shared_filesystem" = 'no' ]; then
CONFIG_shared_filesystem=
fi
}
scan_main() {
# Initial working directory
myworkdir=$(pwd) || { log "pwd failed"; exit 1; }
# Validate control directories supplied on command-line
test -n "$1" || { log "control_dir not specified"; exit 1; }
for ctr_dir in "$@"; do
cd "$myworkdir" || { log "cannot cd to $myworkdir"; exit 1; }
cd "$ctr_dir" || { log "erroneous control dir: $ctr_dir"; exit 1; }
done
for ctr_dir in "$@"; do
cd "$myworkdir" || { log "cannot cd to $myworkdir"; exit 1; }
cd "$ctr_dir" || { log "erroneous control dir: $ctr_dir"; exit 1; }
# This perl script scans the 'processing' sub-directory for grid jobs
# in INLRMS and CANCELING states. If not running as the superuser, also
# filter out any jobs not belonging to the current user. Finally,
# prints to STDOUT onle line for each job containing:
# * grid ID, only the digits
# * local ID, as in LRMS
# * uid of owner of the job.*.local file
listscript='use English;
exit 1 unless opendir(DIR,"processing");
while (my $fname = readdir DIR) {
my ($gridid, $lrmsid, $status);
($gridid) = ($fname =~ m/^job\.(\w+)\.status$/);
next unless defined $gridid;
next unless open(STATUS,"< processing/$fname");
$status = <STATUS>;
close STATUS;
next unless $status and $status =~ m/^INLRMS|CANCELING$/;
next unless open(LOCAL,"< job.$gridid.local");
my @stat = stat(LOCAL);
{ local $/=undef; ($lrmsid) = (<LOCAL> =~ m/^localid=(\d+)/m) };
close LOCAL;
next unless $lrmsid;
next unless @stat;
next unless $EUID == 0 or $EUID == $stat[4];
print "$gridid $lrmsid $stat[4]\n";
}
closedir DIR;
'
# This perl script filters out from the output of the previous script
# jobs whose lrms id is among the arguments passed to the script.
filterscript='my $lrmsids = " @ARGV ";
while(my $line = <STDIN>) {
chomp $line;
my ($gridid,$lrmsid,$uid) = split / /, $line;
next if $lrmsids =~ m/\s$lrmsid\s/;
print "$gridid $lrmsid $uid\n";
}
'
if [ ! -z "$perflogdir" ]; then
start_ts=`date +%s.%N`
fi
lrmsids=$(lrms_list_jobs) || { log "lrms_list_jobs failed"; continue; }
if [ ! -z "$perflogdir" ]; then
stop_ts=`date +%s.%N`
t=`awk "BEGIN { printf \"%.3f\", ${stop_ts}-${start_ts} }"`
echo "[`date +%Y-%m-%d\ %T`] scan-condor-job, condor_q: $t" >> $perflogfile
fi
if [ -n "$LIST_IMPLEMENTED" ]; then
filter_jobs() { /usr/bin/perl -we "$filterscript" $lrmsids; }
else
filter_jobs() { cat; } # no filtering
fi
if [ ! -z "$perflogdir" ]; then
start_ts=`date +%s.%N`
fi
/usr/bin/perl -we "$listscript" | filter_jobs | while read gridid lrmsid uid; do
log () { echo "$progname: $*" 1>&2; }
donefile=job.$gridid.lrms_done
[ -f "$donefile" ] && continue
errorsfile=job.$gridid.errors
[ -w "$errorsfile" ] || { log "cannot write to errors file at: $PWD/$errorsfile"; continue; }
# run in separate process to make sure shell vars of one job
# are not influencing other jobs
( process_job; ) >> "$errorsfile" 2>&1
done
if [ ! -z "$perflogdir" ]; then
stop_ts=`date +%s.%N`
t=`awk "BEGIN { printf \"%.3f\", ${stop_ts}-${start_ts} }"`
echo "[`date +%Y-%m-%d\ %T`] scan-condor-job, ControlDirTraversalAndProcessing: $t" >> $perflogfile
fi
done
}
################################### Condor ####################################
lrms_list_jobs() {
script='my $cmd="$ENV{CONDOR_BIN_PATH}/condor_q";
open Q, "$cmd|" or die "Failed running $cmd : $!\n";
my $out; { local $/; $out = <Q>; }; close Q;
exit 0 if $out =~ m/All queues are empty/;
die "Non-zero exit status returned by $cmd\n" if $?;
my @ids = ($out =~ m/^\s*(\d+)\.\d+\s+/mg);
print "$_\n" for @ids;
'
/usr/bin/perl -we "$script"
}
condor_read_history() {
# This Perl script reads and prints a per-job condor history file. We need to use a
# hash rather than printing the file directly because some attributes appear multiple
# times and we need to use the last occurrence.
condorscript='use strict;
my %data;
if (-e $ARGV[0]) {
open(FILE, "<$ARGV[0]");
foreach my $line (<FILE>) {
if ($line =~ /([\w\+]+)\s=\s(.*)/) {
$data{$1} = $2;
}
}
foreach my $key (keys %data) {
print $key." = ".$data{$key}."\n";
}
}
'
hostname=`hostname -f`
historydir=`$CONDOR_BIN_PATH/condor_config_val HISTORY`
perjobhistorydir=`$CONDOR_BIN_PATH/condor_config_val PER_JOB_HISTORY_DIR`
historyfile=$perjobhistorydir/history.$lrmsid.0
if ! expr match "$perjobhistorydir" '.*Not\sdefined.*' > /dev/null; then
# per-job history files are being used, so we can immediately find the right file
histstring=$( /usr/bin/perl -we "$condorscript" "$historyfile" )
fi
if expr match "$perjobhistorydir" '.*Not\sdefined.*' > /dev/null | test ! -f $historyfile; then
# find the appropriate history file
historyfile=`grep "$hostname#$lrmsid.0" -l $historydir*`
# try to get the full job classad
if expr match "$historyfile" '.*condor.*' > /dev/null; then
{ histstring=$( $CONDOR_BIN_PATH/condor_history -l -file $historyfile -match 1 "$lrmsid" ); } 2>&1
else
histstring=""
fi
fi
# the awk expression checks that the input is more than 1 line long
[ $? = 0 ] && echo "$histstring" | awk 'END{if(NR<2){exit 1}}' || return 1
# Extract information from condor_history output
__RemoteHost=$(echo "$histstring" | sed -n 's/^LastRemoteHost *= *"\(.*\)"[^"]*$/\1/p')
__WallTime=$(echo "$histstring" | sed -n 's/^RemoteWallClockTime *= *\([0-9][0-9]*\).*/\1/p')
__KernelTime=$(echo "$histstring" | sed -n 's/^RemoteSysCpu *= *\([0-9][0-9]*\).*/\1/p')
__UserTime=$(echo "$histstring" | sed -n 's/^RemoteUserCpu *= *\([0-9][0-9]*\).*/\1/p')
__ImageSize=$(echo "$histstring" | sed -n 's/^ImageSize *= *//p')
__ExitCode=$(echo "$histstring" | sed -n 's/^ExitCode *= *//p')
ExitStatus=$(echo "$histstring" | sed -n 's/^ExitStatus *= *//p')
JobStatus=$(echo "$histstring" | sed -n 's/^JobStatus *= *//p')
ExitSignal=$(echo "$histstring" | sed -n 's/^ExitSignal *= *//p')
RemoveReason=$(echo "$histstring" | sed -n 's/^RemoveReason *= *"\(.*\)"[^"]*$/\1/p')
ExitReason=$(echo "$histstring" | sed -n 's/^ExitReason *= *"\(.*\)"[^"]*$/\1/p')
JobCurrentStartDate=$(echo "$histstring" | sed -n 's/^JobCurrentStartDate *= *\([0-9][0-9]*\).*/\1/p')
EnteredCurrentStatus=$(echo "$histstring" | sed -n 's/^EnteredCurrentStatus *= *\([0-9][0-9]*\).*/\1/p')
RequestCpus=$(echo "$histstring" | sed -n 's/^RequestCpus *= *//p')
echo "$RemoveReason" | grep -q 'PeriodicRemove .*evaluated to \(TRUE\)'
[ $? = 0 ] && PeriodicRemove=TRUE
return 0
}
seconds() {
/usr/bin/perl -e 'my $str = "'"$1"'";
exit unless $str =~ /(\d+) (\d\d):(\d\d):(\d\d)/;
printf "%.0f", ( $1 * 24 + $2 ) * 3600 + $3 * 60 + $4;
'
}
find_in_file() { file=$1; regex=$2;
grep "$regex" "$file" | tail -n 1 | sed -n "s/\(.*\)$regex\(.*\)/\2/ip";
}
condor_read_log() {
# Find the Condor log.
gramifile=job.$gridid.grami
[ -f "$gramifile" ] || { log "grami file not found: $PWD/$gramifile"; return 1; }
condor_log=$(sed -n 's/^condor_log=//p' "$gramifile" | tail -n 1)
[ -n "$condor_log" ] || { log "condor_log not set in grami file: $PWD/$gramifile"; return 1; }
log "condor log is at: $condor_log"
[ -r "$condor_log" ] || { log "Condor log file not readable: $condor_log"; return 1; }
# Parse condor log. Look for lines like:
# (return value 0)
# Image size of job updated: 692632
# Usr 0 00:37:09, Sys 0 00:00:04 - Total Remote Usage
# Job executing on host: <129.240.86.70:32769>
_RemoteHost=$( find_in_file "$condor_log" 'Job executing on host: *<\([^:>]*\)' )
_UserTime=$( find_in_file "$condor_log" 'Usr \([0-9][0-9]* [0-9][0-9]:[0-9][0-9]:[0-9][0-9]\).*Total Remote Usage' )
_KernelTime=$( find_in_file "$condor_log" 'Sys \([0-9][0-9]* [0-9][0-9]:[0-9][0-9]:[0-9][0-9]\).*Total Remote Usage' )
_ImageSize=$(find_in_file "$condor_log" 'Image size of job updated: \([0-9][0-9]*\)' )
_ExitCode=$( find_in_file "$condor_log" '(return value \([0-9][0-9]*\))' )
_UserTime=$(seconds "$_UserTime")
_KernelTime=$(seconds "$_KernelTime")
}
lrms_get_accounting() {
condor_read_history || { log "Job has exited but is not yet listed by condor_history"; return 1; }
# set LRMSExitcode to signal that no more tries are necessary
LRMSExitcode=-1
}
lrms_last_call() {
condor_read_log && {
# override values read from .diag with those from condor log
nodename=${_RemoteHost:-$nodename}
UserTime=${_UserTime:-$UserTime}
KernelTime=${_KernelTime:-$KernelTime}
TotalMemory=${_ImageSize:-$TotalMemory}
echo "$progname: ----- begin condor log ($condor_log) -----"
cat "$condor_log"
echo "$progname: ----- end condor log ($condor_log) -----"
echo "$progname: ----- Information extracted from Condor log -----"
[ -n "$_RemoteHost" ] && echo "$progname: RemoteHost=$_RemoteHost"
[ -n "$_UserTime" ] && echo "$progname: UserTime=$_UserTime"
[ -n "$_KernelTime" ] && echo "$progname: KernelTime=$_KernelTime"
[ -n "$_ImageSize" ] && echo "$progname: ImageSize=$_ImageSize"
[ -n "$_ExitCode" ] && echo "$progname: ExitCode=$_ExitCode"
echo "$progname: -------------------------------------------------"
}
if [ -z "$LRMSExitcode" ]; then
log "$progname: No condor_history for Condor ID $lrmsid"
else
# override with values from condor_history
nodename=${__RemoteHost:-$nodename}
WallTime=${__WallTime:-$WallTime}
UserTime=${__UserTime:-$UserTime}
KernelTime=${__KernelTime:-$KernelTime}
TotalMemory=${__ImageSize:-$TotalMemory}
echo "$progname: ----- begin condor history message -----"
echo "$histstring"
echo "$progname: ----- end condor history message -----"
echo "$progname: ----- Information extracted from condor_history -----"
[ -n "$__RemoteHost" ] && echo "$progname: LastRemoteHost=$__RemoteHost"
[ -n "$__WallTime" ] && echo "$progname: RemoteWallClockTime=$__WallTime"
[ -n "$__UserTime" ] && echo "$progname: RemoteUserCpu=$__UserTime"
[ -n "$__KernelTime" ] && echo "$progname: RemoteSysCpu=$__KernelTime"
[ -n "$__ImageSize" ] && echo "$progname: ImageSize=$__ImageSize"
[ -n "$__ExitCode" ] && echo "$progname: ExitCode=$__ExitCode"
[ -n "$ExitStatus" ] && echo "$progname: ExitStatus=$ExitStatus"
[ -n "$JobStatus" ] && echo "$progname: JobStatus=$JobStatus"
[ -n "$ExitSignal" ] && echo "$progname: ExitSignal=$ExitSignal"
[ -n "$RemoveReason" ] && echo "$progname: RemoveReason=$RemoveReason"
[ -n "$JobCurrentStartDate" ] && echo "$progname: JobCurrentStartDate=$JobCurrentStartDate"
[ -n "$EnteredCurrentStatus" ] && echo "$progname: EnteredCurrentStatus=$EnteredCurrentStatus"
[ -n "$ExitReason" ] && echo "$progname: ExitReason=$ExitReason"
[ -n "$RequestCpus" ] && echo "$progname: RequestCpus=$RequestCpus"
echo "$progname: -----------------------------------------------------"
if [ -n "$JobCurrentStartDate" ]; then
date_seconds_to_utc "$JobCurrentStartDate"
seconds_to_mds_date "$return_date_seconds"
LRMSStartTime=$return_mds_date
echo "$progname: LRMSStartTime=$LRMSStartTime"
fi
if [ -n "$EnteredCurrentStatus" ]; then
date_seconds_to_utc "$EnteredCurrentStatus"
seconds_to_mds_date "$return_date_seconds"
LRMSEndTime=$return_mds_date
echo "$progname: LRMSEndTime=$LRMSEndTime"
fi
fi
LRMSExitcode=${__ExitCode:-$_ExitCode}
# set LRMSExitcode to signal that no more tries are necessary
[ -n "$LRMSExitcode" ] || log "ExitCode not found in condor log and condor_history"
# set message in case condor killed the job. LRMSExitcode should not be 0.
if [ -n "$PeriodicRemove" ]; then
[ "$LRMSExitcode" = 0 ] && LRMSExitcode=
LRMSMessage="PeriodicRemove evaluated to TRUE"
elif [ -n "$RemoveReason" ] && [ "$RemoveReason" != "None" ]; then
[ "$LRMSExitcode" = 0 ] && LRMSExitcode=
LRMSMessage="RemoveReason: $RemoveReason"
elif [ -n "$ExitReason" ] && [ "$ExitReason" != "None" ]; then
[ "$LRMSExitcode" = 0 ] && LRMSExitcode=
LRMSMessage="ExitReason: $ExitReason"
fi
# Check whether the job was killed by Condor. If yes, check for exceeded resources limits
if ( [ -n "$RemoveReason" ] && [ "$RemoveReason" != "None" ] ) || [ -n "$PeriodicRemove" ]; then
read_grami; autodetect_overlimit
fi
# Condor does not write a .diag file.
exitcode=$LRMSExitcode
}
scan_init
scan_main "$@"
exit 0
|