This file is indexed.

/usr/include/vtk-7.1/vtkSPHKernel.h is in libvtk7-dev 7.1.1+dfsg1-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
/*=========================================================================

  Program:   Visualization Toolkit
  Module:    vtkSPHKernel.h

  Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
  All rights reserved.
  See Copyright.txt or http://www.kitware.com/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notice for more information.

=========================================================================*/
/**
 * @class   vtkSPHKernel
 * @brief   a family of SPH interpolation kernels
 *
 *
 * vtkSPHKernel is an abstract superclass for smoothed-particle hydrodynamics
 * interpolation kernels as described by D.J. Price (see full reference
 * below).
 *
 * Note that the kernel operates over a volume in space defined by a radius
 * at a sampling point. The kernel implicitly assumes that the particles
 * making up the input data satisfies physical properties such as
 * conservation of mass. Therefore subclasses of this kernel are not
 * generally applicable for interpolation processes, and therefore operate in
 * conjunction with the vthSPHInterpolator class.
 *
 * By default the kernel computes local particle volume from the spatial step^3.
 * However, if both an optional mass and density arrays are provided then they are
 * used to compute local volume.
 *
 * Also be default, the local neighborhood around a point to be interpolated is
 * computed as the CutoffFactor * SpatialStep. (Note the CutoffFactor varies for
 * each type of SPH kernel.) However, the user may specify a CutoffArray which
 * enables variable cutoff distances per each point.
 *
 * @warning
 * For more information see D.J. Price, Smoothed particle hydrodynamics and
 * magnetohydrodynamics, J. Comput. Phys. 231:759-794, 2012. Especially
 * equation 49.
 *
 * @par Acknowledgments:
 * The following work has been generously supported by Altair Engineering
 * and FluiDyna GmbH. Please contact Steve Cosgrove or Milos Stanic for
 * more information.
 *
 * @sa
 * vtkSPHKernel vtkSPHQuinticKernel vtkInterpolationKernel vtkGaussianKernel
 * vtkShepardKernel vtkLinearKernel
*/

#ifndef vtkSPHKernel_h
#define vtkSPHKernel_h

#include "vtkFiltersPointsModule.h" // For export macro
#include "vtkInterpolationKernel.h"
#include "vtkStdString.h" // For vtkStdString ivars

class vtkIdList;
class vtkDoubleArray;
class vtkDataArray;
class vtkFloatArray;


class VTKFILTERSPOINTS_EXPORT vtkSPHKernel : public vtkInterpolationKernel
{
public:
  //@{
  /**
   * Standard methods for instantiation, obtaining type information, and printing.
   */
  vtkTypeMacro(vtkSPHKernel,vtkInterpolationKernel);
  void PrintSelf(ostream& os, vtkIndent indent);
  //@}

  //@{
  /**
   * The user defined intial particle spatial step. This is also referred to as
   * the smoothing length.
   */
  vtkSetClampMacro(SpatialStep,double,0.0,VTK_FLOAT_MAX);
  vtkGetMacro(SpatialStep,double);
  //@}

  //@{
  /**
   * The domain dimension, default to 3.
   */
  vtkSetClampMacro(Dimension,int,1,3);
  vtkGetMacro(Dimension,int);
  //@}

  //@{
  /**
   * Return the cutoff factor. This is hard wired into the kernel (e.g., the
   * vtkSPHQuinticKernel has a cutoff factor = 3.0).
   */
  vtkGetMacro(CutoffFactor,double);
  //@}

  //@{
  /**
   * Specify the (optional) array defining a cutoff distance. If provided this
   * distance is used to find the interpolating points within the local
   * neighborbood. Otherwise the cutoff distance is defined as the cutoff
   * factor times the spatial step size.
   */
  virtual void SetCutoffArray(vtkDataArray*);
  vtkGetObjectMacro(CutoffArray,vtkDataArray);
  //@}

  //@{
  /**
   * Specify the (optional) density array. Used with the mass array to
   * compute local particle volumes.
   */
  virtual void SetDensityArray(vtkDataArray*);
  vtkGetObjectMacro(DensityArray,vtkDataArray);
  //@}

  //@{
  /**
   * Specify the (optional) mass array. Used with the density array to
   * compute local particle volumes.
   */
  virtual void SetMassArray(vtkDataArray*);
  vtkGetObjectMacro(MassArray,vtkDataArray);
  //@}

  /**
   * Produce the computational parameters for the kernel. Invoke this method
   * after setting initial values like SpatialStep.
   */
  virtual void Initialize(vtkAbstractPointLocator *loc, vtkDataSet *ds,
                          vtkPointData *pd);

  /**
   * Given a point x (and optional associated ptId), determine the points
   * around x which form an interpolation basis. The user must provide the
   * vtkIdList pIds, which will be dynamically resized as necessary. The
   * method returns the number of points in the basis. Typically this method
   * is called before ComputeWeights(). Note that while ptId is optional in most
   * cases, if a cutoff array is provided, then ptId must be provided.
   */
  virtual vtkIdType ComputeBasis(double x[3], vtkIdList *pIds, vtkIdType ptId=0);

  /**
   * Given a point x, and a list of basis points pIds, compute interpolation
   * weights associated with these basis points.
   */
  virtual vtkIdType ComputeWeights(double x[3], vtkIdList *pIds,
                                   vtkDoubleArray *weights);

  /**
   * Given a point x, and a list of basis points pIds, compute interpolation
   * weights, plus derivative weights, associated with these basis points.
   */
  virtual vtkIdType ComputeDerivWeights(double x[3], vtkIdList *pIds,
                                        vtkDoubleArray *weights,
                                        vtkDoubleArray *gradWeights);

  /**
   * Compute weighting factor given a normalized distance from a sample point.
   */
  virtual double ComputeFunctionWeight(const double d) = 0;

  /**
   * Compute weighting factor for derivative quantities given a normalized
   * distance from a sample point.
   */
  virtual double ComputeDerivWeight(const double d) = 0;

  //@{
  /**
   * Return the SPH normalization factor. This also includes the contribution
   * of 1/h^d, where h is the smoothing length (i.e., spatial step) and d is
   * the dimension of the kernel. The returned value is only valid after the
   * kernel is initialized.
   */
  vtkGetMacro(NormFactor,double);
  //@}

protected:
  vtkSPHKernel();
  ~vtkSPHKernel();

  // Instance variables
  double SpatialStep; //also known as smoothing length h
  int Dimension; //sptial dimension of the kernel

  // Optional arrays aid in the interpolation process (computes volume)
  vtkDataArray *CutoffArray;
  vtkDataArray *DensityArray;
  vtkDataArray *MassArray;

  // Internal data members generated during construction and initialization
  // Terminology is spatial step = smoothing length h
  double CutoffFactor; //varies across each kernel, e.g. cubic=2, quartic=2.5, quintic=3
  double Cutoff; //the spatial step * cutoff factor
  double Sigma; //normalization constant
  double DistNorm; //distance normalization factor 1/(spatial step)
  double NormFactor; //dimensional normalization factor sigma/(spatial step)^Dimension
  double DefaultVolume; //if mass and density arrays not specified, use this
  bool UseCutoffArray; //if single component cutoff array provided
  bool UseArraysForVolume; //if both mass and density arrays are present

private:
  vtkSPHKernel(const vtkSPHKernel&) VTK_DELETE_FUNCTION;
  void operator=(const vtkSPHKernel&) VTK_DELETE_FUNCTION;
};

#endif