This file is indexed.

/usr/include/vtk-7.1/vtkNetCDFCFReader.h is in libvtk7-dev 7.1.1+dfsg1-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
// -*- c++ -*-
/*=========================================================================

  Program:   Visualization Toolkit
  Module:    vtkNetCDFCFReader.h

  Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
  All rights reserved.
  See Copyright.txt or http://www.kitware.com/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notice for more information.

=========================================================================*/

/*-------------------------------------------------------------------------
  Copyright 2008 Sandia Corporation.
  Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
  the U.S. Government retains certain rights in this software.
-------------------------------------------------------------------------*/

/**
 * @class   vtkNetCDFCFReader
 *
 *
 *
 * Reads netCDF files that follow the CF convention.  Details on this convention
 * can be found at <http://cf-pcmdi.llnl.gov/>.
 *
*/

#ifndef vtkNetCDFCFReader_h
#define vtkNetCDFCFReader_h

#include "vtkIONetCDFModule.h" // For export macro
#include "vtkNetCDFReader.h"

#include "vtkStdString.h" // Used for ivars.

class vtkImageData;
class vtkPoints;
class vtkRectilinearGrid;
class vtkStructuredGrid;
class vtkUnstructuredGrid;

class VTKIONETCDF_EXPORT vtkNetCDFCFReader : public vtkNetCDFReader
{
public:
  vtkTypeMacro(vtkNetCDFCFReader, vtkNetCDFReader);
  static vtkNetCDFCFReader *New();
  virtual void PrintSelf(ostream &os, vtkIndent indent);

  //@{
  /**
   * If on (the default), then 3D data with latitude/longitude dimensions
   * will be read in as curvilinear data shaped like spherical coordinates.
   * If false, then the data will always be read in Cartesian coordinates.
   */
  vtkGetMacro(SphericalCoordinates, int);
  vtkSetMacro(SphericalCoordinates, int);
  vtkBooleanMacro(SphericalCoordinates, int);
  //@}

  //@{
  /**
   * The scale and bias of the vertical component of spherical coordinates.  It
   * is common to write the vertical component with respect to something other
   * than the center of the sphere (for example, the surface).  In this case, it
   * might be necessary to scale and/or bias the vertical height.  The height
   * will become height*scale + bias.  Keep in mind that if the positive
   * attribute of the vertical dimension is down, then the height is negated.
   * By default the scale is 1 and the bias is 0 (that is, no change).  The
   * scaling will be adjusted if it results in invalid (negative) vertical
   * values.
   */
  vtkGetMacro(VerticalScale, double);
  vtkSetMacro(VerticalScale, double);
  vtkGetMacro(VerticalBias, double);
  vtkSetMacro(VerticalBias, double);
  //@}

  //@{
  /**
   * Set/get the data type of the output.  The index used is taken from the list
   * of VTK data types in vtkType.h.  Valid types are VTK_IMAGE_DATA,
   * VTK_RECTILINEAR_GRID, VTK_STRUCTURED_GRID, and VTK_UNSTRUCTURED_GRID.  In
   * addition you can set the type to -1 (the default), and this reader will
   * pick the data type best suited for the dimensions being read.
   */
  vtkGetMacro(OutputType, int);
  virtual void SetOutputType(int type);
  void SetOutputTypeToAutomatic() { this->SetOutputType(-1); }
  void SetOutputTypeToImage() { this->SetOutputType(VTK_IMAGE_DATA); }
  void SetOutputTypeToRectilinear() {this->SetOutputType(VTK_RECTILINEAR_GRID);}
  void SetOutputTypeToStructured() { this->SetOutputType(VTK_STRUCTURED_GRID); }
  void SetOutputTypeToUnstructured() {
    this->SetOutputType(VTK_UNSTRUCTURED_GRID);
  }
  //@}

  /**
   * Returns true if the given file can be read.
   */
  static int CanReadFile(const char *filename);

protected:
  vtkNetCDFCFReader();
  ~vtkNetCDFCFReader();

  int SphericalCoordinates;

  double VerticalScale;
  double VerticalBias;

  int OutputType;

  virtual int RequestDataObject(vtkInformation *request,
                                vtkInformationVector **inputVector,
                                vtkInformationVector *outputVector);

  virtual int RequestInformation(vtkInformation *request,
                                 vtkInformationVector **inputVector,
                                 vtkInformationVector *outputVector);

  virtual int RequestData(vtkInformation *request,
                          vtkInformationVector **inputVector,
                          vtkInformationVector *outputVector);

  //@{
  /**
   * Interprets the special conventions of COARDS.
   */
  virtual int ReadMetaData(int ncFD);
  virtual int IsTimeDimension(int ncFD, int dimId);
  virtual vtkSmartPointer<vtkDoubleArray> GetTimeValues(int ncFD, int dimId);
  //@}

  class vtkDimensionInfo {
  public:
    vtkDimensionInfo() { };
    vtkDimensionInfo(int ncFD, int id);
    const char *GetName() const { return this->Name.c_str(); }
    enum UnitsEnum {
      UNDEFINED_UNITS,
      TIME_UNITS,
      LATITUDE_UNITS,
      LONGITUDE_UNITS,
      VERTICAL_UNITS
    };
    UnitsEnum GetUnits() const { return this->Units; }
    vtkSmartPointer<vtkDoubleArray> GetCoordinates() {return this->Coordinates;}
    vtkSmartPointer<vtkDoubleArray> GetBounds() { return this->Bounds; }
    bool GetHasRegularSpacing() const { return this->HasRegularSpacing; }
    double GetOrigin() const { return this->Origin; }
    double GetSpacing() const { return this->Spacing; }
    vtkSmartPointer<vtkStringArray> GetSpecialVariables() const {
      return this->SpecialVariables;
    }
  protected:
    vtkStdString Name;
    int DimId;
    vtkSmartPointer<vtkDoubleArray> Coordinates;
    vtkSmartPointer<vtkDoubleArray> Bounds;
    UnitsEnum Units;
    bool HasRegularSpacing;
    double Origin, Spacing;
    vtkSmartPointer<vtkStringArray> SpecialVariables;
    int LoadMetaData(int ncFD);
  };
  class vtkDimensionInfoVector;
  friend class vtkDimensionInfoVector;
  vtkDimensionInfoVector *DimensionInfo;
  vtkDimensionInfo *GetDimensionInfo(int dimension);

  class vtkDependentDimensionInfo {
  public:
    vtkDependentDimensionInfo() : Valid(false) { };
    vtkDependentDimensionInfo(int ncFD, int varId, vtkNetCDFCFReader *parent);
    bool GetValid() const { return this->Valid; }
    bool GetHasBounds() const { return this->HasBounds; }
    bool GetCellsUnstructured() const { return this->CellsUnstructured; }
    vtkSmartPointer<vtkIntArray> GetGridDimensions() const {
      return this->GridDimensions;
    }
    vtkSmartPointer<vtkDoubleArray> GetLongitudeCoordinates() const {
      return this->LongitudeCoordinates;
    }
    vtkSmartPointer<vtkDoubleArray> GetLatitudeCoordinates() const {
      return this->LatitudeCoordinates;
    }
    vtkSmartPointer<vtkStringArray> GetSpecialVariables() const {
      return this->SpecialVariables;
    }
  protected:
    bool Valid;
    bool HasBounds;
    bool CellsUnstructured;
    vtkSmartPointer<vtkIntArray> GridDimensions;
    vtkSmartPointer<vtkDoubleArray> LongitudeCoordinates;
    vtkSmartPointer<vtkDoubleArray> LatitudeCoordinates;
    vtkSmartPointer<vtkStringArray> SpecialVariables;
    int LoadMetaData(int ncFD, int varId, vtkNetCDFCFReader *parent);
    int LoadCoordinateVariable(int ncFD, int varId, vtkDoubleArray *coords);
    int LoadBoundsVariable(int ncFD, int varId, vtkDoubleArray *coords);
    int LoadUnstructuredBoundsVariable(int ncFD, int varId,
                                       vtkDoubleArray *coords);
  };
  friend class vtkDependentDimensionInfo;
  class vtkDependentDimensionInfoVector;
  friend class vtkDependentDimensionInfoVector;
  vtkDependentDimensionInfoVector *DependentDimensionInfo;

  // Finds the dependent dimension information for the given set of dimensions.
  // Returns NULL if no information has been recorded.
  vtkDependentDimensionInfo *FindDependentDimensionInfo(vtkIntArray *dims);

  /**
   * Given the list of dimensions, identify the longitude, latitude, and
   * vertical dimensions.  -1 is returned for any not found.  The results depend
   * on the values in this->DimensionInfo.
   */
  virtual void IdentifySphericalCoordinates(vtkIntArray *dimensions,
                                            int &longitudeDim,
                                            int &latitudeDim,
                                            int &verticalDim);

  enum CoordinateTypesEnum {
    COORDS_UNIFORM_RECTILINEAR,
    COORDS_NONUNIFORM_RECTILINEAR,
    COORDS_REGULAR_SPHERICAL,
    COORDS_2D_EUCLIDEAN,
    COORDS_2D_SPHERICAL,
    COORDS_EUCLIDEAN_4SIDED_CELLS,
    COORDS_SPHERICAL_4SIDED_CELLS,
    COORDS_EUCLIDEAN_PSIDED_CELLS,
    COORDS_SPHERICAL_PSIDED_CELLS
  };

  /**
   * Based on the given dimensions and the current state of the reader, returns
   * how the coordinates should be interpreted.  The returned value is one of
   * the CoordinateTypesEnum identifiers.
   */
  CoordinateTypesEnum CoordinateType(vtkIntArray *dimensions);

  /**
   * Returns false for spherical dimensions, which should use cell data.
   */
  virtual bool DimensionsAreForPointData(vtkIntArray *dimensions);

  /**
   * Convenience function that takes piece information and then returns a set of
   * extents to load based on this->WholeExtent.  The result is returned in
   * extent.
   */
  void ExtentForDimensionsAndPiece(int pieceNumber,
                                   int numberOfPieces,
                                   int ghostLevels,
                                   int extent[6]);

  /**
   * Overridden to retrieve stored extent for unstructured data.
   */
  virtual void GetUpdateExtentForOutput(vtkDataSet *output, int extent[6]);

  //@{
  /**
   * Internal methods for setting rectilinear coordinates.
   */
  void AddRectilinearCoordinates(vtkImageData *imageOutput);
  void AddRectilinearCoordinates(vtkRectilinearGrid *rectilinearOutput);
  void FakeRectilinearCoordinates(vtkRectilinearGrid *rectilinearOutput);
  void Add1DRectilinearCoordinates(vtkPoints *points, const int extent[6]);
  void Add2DRectilinearCoordinates(vtkPoints *points, const int extent[6]);
  void Add1DRectilinearCoordinates(vtkStructuredGrid *structuredOutput);
  void Add2DRectilinearCoordinates(vtkStructuredGrid *structuredOutput);
  void FakeStructuredCoordinates(vtkStructuredGrid *structuredOutput);
  void Add1DRectilinearCoordinates(vtkUnstructuredGrid *unstructuredOutput,
                                   const int extent[6]);
  void Add2DRectilinearCoordinates(vtkUnstructuredGrid *unstructuredOutput,
                                   const int extent[6]);
  //@}

  //@{
  /**
   * Internal methods for setting spherical coordinates.
   */
  void Add1DSphericalCoordinates(vtkPoints *points, const int extent[6]);
  void Add2DSphericalCoordinates(vtkPoints *points, const int extent[6]);
  void Add1DSphericalCoordinates(vtkStructuredGrid *structuredOutput);
  void Add2DSphericalCoordinates(vtkStructuredGrid *structuredOutput);
  void Add1DSphericalCoordinates(vtkUnstructuredGrid *unstructuredOutput,
                                 const int extent[6]);
  void Add2DSphericalCoordinates(vtkUnstructuredGrid *unstructuredOutput,
                                 const int extent[6]);
  //@}

  /**
   * Internal method for building unstructred cells that match structured cells.
   */
  void AddStructuredCells(vtkUnstructuredGrid *unstructuredOutput,
                          const int extent[6]);

  //@{
  /**
   * Internal methods for creating unstructured cells.
   */
  void AddUnstructuredRectilinearCoordinates(
                                        vtkUnstructuredGrid *unstructuredOutput,
                                        const int extent[6]);
  void AddUnstructuredSphericalCoordinates(
                                        vtkUnstructuredGrid *unstructuredOutput,
                                        const int extent[6]);
  //@}


private:
  vtkNetCDFCFReader(const vtkNetCDFCFReader &) VTK_DELETE_FUNCTION;
  void operator=(const vtkNetCDFCFReader &) VTK_DELETE_FUNCTION;
};

#endif //vtkNetCDFCFReader_h