This file is indexed.

/usr/include/trilinos/Zoltan2_PartitionMapping.hpp is in libtrilinos-zoltan2-dev 12.12.1-5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
// @HEADER
//
// ***********************************************************************
//
//   Zoltan2: A package of combinatorial algorithms for scientific computing
//                  Copyright 2012 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Karen Devine      (kddevin@sandia.gov)
//                    Erik Boman        (egboman@sandia.gov)
//                    Siva Rajamanickam (srajama@sandia.gov)
//
// ***********************************************************************
//
// @HEADER

/*! \file Zoltan2_PartMapping.hpp
    \brief Defines the PartMapping class.
*/

#ifndef _ZOLTAN2_PARTITIONMAPPING_HPP_
#define _ZOLTAN2_PARTITIONMAPPING_HPP_
#include "Zoltan2_Model.hpp"
#include "Zoltan2_PartitioningSolution.hpp"
#include "Teuchos_Comm.hpp"
#include "Zoltan2_Environment.hpp"
#include "Zoltan2_MachineRepresentation.hpp"
#include "Zoltan2_Algorithm.hpp"

namespace Zoltan2 {

/*! \brief PartitionMapping maps a solution or an input distribution to ranks.
*/

template <typename Adapter>
  class PartitionMapping :public Algorithm<Adapter>
{
public:

#ifndef DOXYGEN_SHOULD_SKIP_THIS
  typedef typename Adapter::gno_t gno_t;
  typedef typename Adapter::scalar_t scalar_t;
  typedef typename Adapter::scalar_t pcoord_t;
  typedef typename Adapter::lno_t lno_t;
  typedef typename Adapter::part_t part_t;
  typedef typename Adapter::user_t user_t;
#endif

  const Teuchos::RCP <const Teuchos::Comm<int> >comm;
  const Teuchos::RCP <const Zoltan2::MachineRepresentation <pcoord_t,part_t> > machine;
  const Teuchos::RCP <const Adapter > input_adapter;
  const Teuchos::RCP <const Zoltan2::PartitioningSolution<Adapter> >soln;
  const Teuchos::RCP <const Environment >env;
  const part_t num_parts;
  const part_t *solution_parts;


/*! \brief Constructor 
 *  Constructor builds the map from parts to ranks.
 *  KDDKDD WILL NEED THE SOLUTION FOR INTELLIGENT MAPPING
 *  KDDKDD BUT MAY WANT TO SET PART SIZES BASED ON CAPABILITY OF A RANK.
 *  KDDKDD SO WHEN SHOULD THE MAP BE CREATED?
 */
  PartitionMapping(
      const Teuchos::RCP <const Teuchos::Comm<int> >comm_,
      const Teuchos::RCP <const Zoltan2::MachineRepresentation<pcoord_t,part_t> >machine_, // If NULL, assume homogeneous
                                                    // Make optional
      const Teuchos::RCP <const Adapter> input_adapter_, // Needed to get information about
                                           // the application data (coords, graph)
      const Teuchos::RCP <const Zoltan2::PartitioningSolution<Adapter> >soln_, // Needed for mapping a partition
      const Teuchos::RCP <const Environment > envConst_  // Perhaps envConst should be optional
                                           // so applications can create a mapping
                                           // directly
    ):comm(comm_),
      machine(machine_),
      input_adapter(input_adapter_),
      soln(soln_),
      env(envConst_),num_parts(soln_->getActualGlobalNumberOfParts()),
      solution_parts(soln_->getPartListView())
          {} ;

  PartitionMapping(
      const Teuchos::RCP <const Teuchos::Comm<int> >comm_,
      const Teuchos::RCP <const Zoltan2::MachineRepresentation<pcoord_t,part_t> >machine_, // If NULL, assume homogeneous
                                                    // Make optional
      const Teuchos::RCP <const Adapter> input_adapter_, // Needed to get information about
                                           // the application data (coords, graph)
      const part_t num_parts_,
      const part_t *result_parts,
      const Teuchos::RCP <const Environment > envConst_  // Perhaps envConst should be optional
                                           // so applications can create a mapping
                                           // directly
    ):comm(comm_),
      machine(machine_),
      input_adapter(input_adapter_),
      soln(),
      env(envConst_),num_parts(num_parts_),
      solution_parts(result_parts)
          {} ;

  PartitionMapping(
      const Teuchos::RCP <const Teuchos::Comm<int> >comm_,
      const Teuchos::RCP <const Environment > envConst_  // Perhaps envConst should be optional
                                           // so applications can create a mapping
                                           // directly
    ):comm(comm_),
      machine(),
      input_adapter(),
      soln(),
      env(envConst_),num_parts(0),
      solution_parts(NULL)
          {} ;

  PartitionMapping():
          comm(0),
          machine(0),
          input_adapter(0),
          soln(0),
          env(0),
          solution_parts(NULL){};

  PartitionMapping(const Teuchos::RCP <const Environment >envConst_):
          comm(0),
          machine(0),
          input_adapter(0),
          soln(0),
          env(envConst_),num_parts(0),
          solution_parts(NULL){};

  PartitionMapping(
      const Teuchos::RCP <const Environment > envConst_,
      const Teuchos::RCP <const Teuchos::Comm<int> >comm_,
      const Teuchos::RCP <const MachineRepresentation<pcoord_t,part_t> >machine_
      ):
          comm(comm_),
          machine(machine_),
          input_adapter(0),
          soln(0),
          env(envConst_),num_parts(0),
          solution_parts(NULL){};


  virtual ~PartitionMapping(){}

/*! \brief Returns the number of parts to be assigned to this process.
 */
  virtual size_t getLocalNumberOfParts() const = 0;

  /*! \brief Get the parts belonging to a process.
   *  \param procId a process rank
   *  \param numParts on return will be set the number of parts belonging
   *                    to the process.
   *  \param parts on return will be a pointer to the parts assigned to procId
   *
   */
  // TODO:  KDDKDD Decide whether information should be avail for any process
  // TODO:  KDDKDD (requiring more storage or a directory) or only for the 
  // TODO:  KDDKDD local process.
  // TODO:  KDDKDD Could require O(nprocs) storage
  virtual void getPartsForProc(int procId, part_t &numParts, part_t *&parts)
    const = 0;

  /*! \brief Get the processes containing a part.
   *  \param partId a part number from 0 to one less than the global number
   *                of parts.
   *  \param numProcs on return will be the number of procs owning partId
   *  \param procs on return will be prointer to the procs owning partId
   */
  // TODO:  KDDKDD Arguments should be count and array, not min and max.
  // TODO:  KDDKDD Could require O(nGlobalParts) storage
  virtual void getProcsForPart(part_t partId, part_t &numProcs, part_t *&procs) const = 0;

private:
};

}  // namespace Zoltan2

#endif