/usr/include/trilinos/Zoltan2_MappingProblem.hpp is in libtrilinos-zoltan2-dev 12.12.1-5.
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//
// ***********************************************************************
//
// Zoltan2: A package of combinatorial algorithms for scientific computing
// Copyright 2012 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
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// modification, are permitted provided that the following conditions are
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// contributors may be used to endorse or promote products derived from
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//
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// @HEADER
/*! \file Zoltan2_MappingProblem.hpp
\brief Defines the MappingProblem class.
*/
#ifndef _ZOLTAN2_MAPPINGPROBLEM_HPP_
#define _ZOLTAN2_MAPPINGPROBLEM_HPP_
#include <Zoltan2_Standards.hpp>
#include <Zoltan2_Problem.hpp>
#include <Zoltan2_MappingSolution.hpp>
#include <Zoltan2_PartitioningSolution.hpp>
#include <Zoltan2_MachineRepresentation.hpp>
#include <Zoltan2_AlgBlockMapping.hpp>
#include <Zoltan2_TaskMapping.hpp>
#include <string>
namespace Zoltan2{
////////////////////////////////////////////////////////////////////////
/*! \brief MappingProblem enables mapping of a partition (either computed or input) to MPI ranks.
*
* The MappingProblem is the core of the Zoltan2 mappin API.
* Based on the the user's input and parameters, the MappingProblem
* sets up a computational Model, and a Solution object. When the user
* calls the solve() method, the MappingProblem runs the algorithm,
* after which the Solution object may be obtained by the user.
*
* The template parameter is the InputAdapter containing the data that
* is to be partitioned.
*/
template<typename Adapter,
typename MachineRep = // Default MachineRep type
MachineRepresentation<typename Adapter::scalar_t,
typename Adapter::part_t> >
class MappingProblem : public Problem<Adapter>
{
public:
typedef typename Adapter::scalar_t scalar_t;
typedef typename Adapter::gno_t gno_t;
typedef typename Adapter::lno_t lno_t;
typedef typename Adapter::user_t user_t;
typedef typename Adapter::part_t part_t;
typedef typename Adapter::base_adapter_t base_adapter_t;
typedef PartitioningSolution<Adapter> partsoln_t;
typedef MappingSolution<Adapter> mapsoln_t;
/*! \brief Destructor
*/
virtual ~MappingProblem() {};
/*! \brief Constructor that takes an Teuchos communicator
*/
MappingProblem(Adapter *A_, Teuchos::ParameterList *p_,
const Teuchos::RCP<const Teuchos::Comm<int> > &ucomm_,
partsoln_t *partition_ = NULL, MachineRep *machine_ = NULL) :
Problem<Adapter>(A_, p_, ucomm_)
{
HELLO;
createMappingProblem(partition_, machine_);
};
#ifdef HAVE_ZOLTAN2_MPI
/*! \brief Constructor that takes an MPI communicator
*/
MappingProblem(Adapter *A_, Teuchos::ParameterList *p_,
MPI_Comm mpicomm_,
partsoln_t *partition_ = NULL, MachineRep *machine_ = NULL) :
MappingProblem(A_, p_,
rcp<const Comm<int> >(new Teuchos::MpiComm<int>(
Teuchos::opaqueWrapper(mpicomm_))),
partition_, machine_)
{}
#endif
//! \brief Direct the problem to create a solution.
//
// \param updateInputData If true this indicates that either
// this is the first attempt at solution, or that we
// are computing a new solution and the input data has
// changed since the previous solution was computed.
// If false, this indicates that we are computing a
// new solution using the same input data was used for
// the previous solution, even though the parameters
// may have been changed.
//
// For the sake of performance, we ask the caller to set \c updateInputData
// to false if he/she is computing a new solution using the same input data,
// but different problem parameters, than that which was used to compute
// the most recent solution.
void solve(bool updateInputData=true);
/*! \brief Set up validators specific to this Problem
*/
static void getValidParameters(ParameterList & pl)
{
MachineRepresentation <typename Adapter::scalar_t,typename Adapter::part_t>::getValidParameters(pl);
RCP<Teuchos::StringValidator> mapping_algorithm_Validator =
Teuchos::rcp( new Teuchos::StringValidator(
Teuchos::tuple<std::string>( "geometric", "default", "block" )));
pl.set("mapping_algorithm", "default", "mapping algorithm",
mapping_algorithm_Validator);
// bool parameter
pl.set("distributed_input_adapter", true,
"Whether the input adapter for mapping is distributed over processes or not",
Environment::getBoolValidator());
// bool parameter
pl.set("divide_prime_first", false,
"When partitioning into-non power of two, whether to partition for nonpowers of two at the beginning, or at the end",
Environment::getBoolValidator());
//TODO: This should be positive integer validator.
pl.set("ranks_per_node", 1,
"The number of MPI ranks per node",
Environment::getAnyIntValidator());
pl.set("reduce_best_mapping", true,
"If true, nodes will calculate different mappings with rotations, and best one will be reduced. If not, the result will be the one with longest dimension partitioning.",
Environment::getBoolValidator());
}
//! \brief Get the solution to the problem.
//
// \return the solution to the most recent solve().
mapsoln_t *getSolution() { return soln.getRawPtr(); };
Teuchos::RCP<MachineRep> getMachine(){return machine; }
private:
void createMappingProblem(partsoln_t *partition_, MachineRep *machine_);
Teuchos::RCP<mapsoln_t> soln;
Teuchos::RCP<partsoln_t> partition;
Teuchos::RCP<MachineRep> machine;
};
////////////////////////////////////////////////////////////////////////
// createMappingProblem
// Method with common functionality for creating a MappingProblem.
// Individual constructors do appropriate conversions of input, etc.
// This method does everything that all constructors must do.
template <typename Adapter, typename MachineRep>
void MappingProblem<Adapter, MachineRep>::createMappingProblem(
partsoln_t *partition_,
MachineRep *machine_)
{
HELLO;
// Save pointer to user's partitioning solution. If not provided, create one.
if (partition_) {
// User provided a partitioning solution; use it.
partition = Teuchos::rcp(partition_, false);
}
else {
// User did not provide a partitioning solution;
// Use input adapter to create a "fake" solution with the input partition.
partition = rcp(new partsoln_t(this->env_, this->comm_,
this->inputAdapter_->getNumWeightsPerID()));
size_t nLocal = this->inputAdapter_->getLocalNumIDs();
const part_t *inputPartsView = NULL;
this->inputAdapter_->getPartsView(inputPartsView);
if (nLocal && inputPartsView == NULL) {
// User has not provided input parts in input adapter
int me = this->comm_->getRank();
ArrayRCP<part_t> inputParts = arcp(new part_t[nLocal], 0, nLocal, true);
for (size_t i = 0; i < nLocal; i++) inputParts[i] = me;
partition->setParts(inputParts);
}
else {
// User has provided input parts; use those.
ArrayRCP<part_t> inputParts = arcp(const_cast<part_t *>(inputPartsView),
0, nLocal, false);
partition->setParts(inputParts);
}
}
// Save pointer to user's machine. If not provided, create one.
if (machine_)
machine = Teuchos::rcp(machine_, false);
else {
try {
Teuchos::ParameterList pl = this->env_->getParameters();
machine = Teuchos::rcp(new MachineRep(*(this->comm_), pl));
}
Z2_FORWARD_EXCEPTIONS;
}
}
////////////////////////////////////////////////////////////////////////
template <typename Adapter, typename MachineRep>
void MappingProblem<Adapter, MachineRep>::solve(bool newData)
{
HELLO;
// Determine which algorithm to use based on defaults and parameters.
std::string algName("block");
Teuchos::ParameterList pl = this->env_->getParametersNonConst();
const Teuchos::ParameterEntry *pe = pl.getEntryPtr("mapping_algorithm");
if (pe) algName = pe->getValue<std::string>(&algName);
try {
if (algName == "default") {
throw(NotImplemented(__FILE__, __LINE__, __func__zoltan2__));
#ifdef KDDKDD_NOT_READH
this->algorithm_ = rcp(new AlgDefaultMapping<Adapter,MachineRep>(
this->comm_, machine,
this->inputAdapter_,
partition, this->envConst_));
this->soln = rcp(new mapsoln_t(this->env_, this->comm_, this->algorithm_));
this->algorithm_->map(this->soln);
#endif
}
else if (algName == "block") {
this->algorithm_ = rcp(new AlgBlockMapping<Adapter,MachineRep>(
this->comm_, machine,
this->inputAdapter_,
partition, this->envConst_));
this->soln = rcp(new mapsoln_t(this->env_, this->comm_, this->algorithm_));
this->algorithm_->map(this->soln);
}
else if (algName == "geometric") {
bool is_input_distributed = true;
const Teuchos::ParameterEntry *pe_input_adapter = pl.getEntryPtr("distributed_input_adapter");
if (pe_input_adapter) is_input_distributed = pe_input_adapter->getValue<bool>(&is_input_distributed);
int ranks_per_node = 1;
pe_input_adapter = pl.getEntryPtr("ranks_per_node");
if (pe_input_adapter) ranks_per_node = pe_input_adapter->getValue<int>(&ranks_per_node);
bool divide_prime_first = false;
pe_input_adapter = pl.getEntryPtr("divide_prime_first");
if (pe_input_adapter) divide_prime_first = pe_input_adapter->getValue<bool>(÷_prime_first);
bool reduce_best_mapping = true;
pe_input_adapter = pl.getEntryPtr("reduce_best_mapping");
if (pe_input_adapter) reduce_best_mapping = pe_input_adapter->getValue<bool>(&reduce_best_mapping);
this->algorithm_ =
rcp(new CoordinateTaskMapper<Adapter,part_t>(this->comm_,
machine,
this->inputAdapter_,
partition,
this->envConst_,
is_input_distributed, ranks_per_node, divide_prime_first, reduce_best_mapping));
this->soln = rcp(new mapsoln_t(this->env_, this->comm_, this->algorithm_));
this->algorithm_->map(this->soln);
}
else {
// Add other mapping methods here
throw std::logic_error("specified mapping_algorithm not supported");
}
}
Z2_FORWARD_EXCEPTIONS;
}
} //namespace Zoltan2
#endif
#ifdef KDDKDD
Case 1
MappingProblem(
InputAdapter
partitioningSolution
MachineRepresentation=NULL
// KDD Don't know how to properly template MachineRepresentation. Proper types
// KDD probably depend on how it is to be used. I imagine MJ needs
// KDD pcoord_t to be scalar_t, right? But how does user know that at the
// KDD time he calls this constructor?
)
{
// Create MachineRepresentation if not provided
// User would have called partitioning problem and provides a solution
// Mapping vertices are the parts from the partitioning solution
// Create MappingSolution that can return getRankForPart(part)
}
Case 2
MappingProblem(
InputAdapter
MachineRepresentation=NULL
)
{
// Create MachineRepresentation if not provided
// Compute mapping vertices based on InputAdapter's partition
// Assuming input adapter's partition should be used.
// KDD would use with Exodus/Nemesis input files or PamGen meshes
}
Case 3
MappingProblem(
InputAdapter
MachineRepresentation=NULL
)
{
// Create MachineRepresentation if not provided
// Call a partitioning algorithm to get mapping vertices that are the parts
// Mapping vertices are computed from this internal partitioning solution
// Maybe relevant models can be shared.
// Similar to what's in PartitioningProblem now and to what LibTopoMap does
}
Case 4
MappingProblem(
InputAdapter
MachineRepresentation=NULL
)
{
// Create MachineRepresentation if not provided
// Call mapping with mapping vertices == IDs from the input adapter.
// Similar in spirit to previous case, but runs more slowly since current
// task mapping is done in serial.
// Mehmet has done experiments with Scotch, comparing case 3 with 4.
// Case 3 is faster; case 4 has higher quality.
}
In general, the applyPartitioningSolution method should take an
optional MappingSolution.
Should MappingSolution provide a re-numbered communicator reflecting the new mapping?
#endif
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