/usr/include/trilinos/Zoltan2_GraphAdapter.hpp is in libtrilinos-zoltan2-dev 12.12.1-5.
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//
// ***********************************************************************
//
// Zoltan2: A package of combinatorial algorithms for scientific computing
// Copyright 2012 Sandia Corporation
//
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// @HEADER
/*! \file Zoltan2_GraphAdapter.hpp
\brief Defines the GraphAdapter interface.
*/
#ifndef _ZOLTAN2_GRAPHADAPTER_HPP_
#define _ZOLTAN2_GRAPHADAPTER_HPP_
#include <Zoltan2_Adapter.hpp>
#include <Zoltan2_VectorAdapter.hpp>
namespace Zoltan2 {
/*! \brief Enumerated entity type for graphs: Vertices or Edges
*/
enum GraphEntityType {
GRAPH_VERTEX,
GRAPH_EDGE
};
/*! \brief GraphAdapter defines the interface for graph-based user data.
Adapter objects provide access for Zoltan2 to the user's data.
Many built-in adapters are already defined for common data structures,
such as Tpetra and Epetra objects and C-language pointers to arrays.
Data types:
\li \c scalar_t vertex and edge weights
\li \c lno_t local indices and local counts
\li \c gno_t global indices and global counts
\li \c node_t is a Kokkos Node type
The Kokkos node type can be safely ignored.
The template parameter \c User is a user-defined data type
which, through a traits mechanism, provides the actual data types
with which the Zoltan2 library will be compiled.
\c User may be the actual class or structure used by application to
represent a vector, or it may be the helper class BasicUserTypes.
See InputTraits for more information.
The \c scalar_t type, representing use data such as matrix values, is
used by Zoltan2 for weights, coordinates, part sizes and
quality metrics.
Some User types (like Tpetra::CrsMatrix) have an inherent scalar type,
and some
(like Tpetra::CrsGraph) do not. For such objects, the scalar type is
set by Zoltan2 to \c float. If you wish to change it to double, set
the second template parameter to \c double.
*/
template <typename User, typename UserCoord=User>
class GraphAdapter : public BaseAdapter<User> {
private:
enum GraphEntityType primaryEntityType; // Entity (vertex or edge) to
// be partitioned, ordered,
// colored, matched, etc.
enum GraphEntityType adjacencyEntityType; // Entity (edge or vertex)
// describing adjacencies;
// typically opposite of
// primaryEntityType.
VectorAdapter<UserCoord> *coordinateInput_; // A VectorAdapter containing
// coordinates of the objects
// with primaryEntityType;
// optional.
bool haveCoordinateInput_; // Flag indicating whether
// coordinateInput_ is provided.
public:
#ifndef DOXYGEN_SHOULD_SKIP_THIS
typedef typename InputTraits<User>::scalar_t scalar_t;
typedef typename InputTraits<User>::lno_t lno_t;
typedef typename InputTraits<User>::gno_t gno_t;
typedef typename InputTraits<User>::node_t node_t;
typedef User user_t;
typedef UserCoord userCoord_t;
typedef GraphAdapter<User, UserCoord> base_adapter_t;
#endif
enum BaseAdapterType adapterType() const {return GraphAdapterType;}
/*! \brief Destructor
*/
virtual ~GraphAdapter() {};
// Default GraphEntityType is GRAPH_VERTEX.
GraphAdapter() : primaryEntityType(GRAPH_VERTEX),
adjacencyEntityType(GRAPH_EDGE),
coordinateInput_(),
haveCoordinateInput_(false) {}
////////////////////////////////////////////////////////////////////////////
// Methods to be defined in derived classes.
/*! \brief Returns the number of vertices on this process.
*/
virtual size_t getLocalNumVertices() const = 0;
/*! \brief Returns the number of edges on this process.
*/
virtual size_t getLocalNumEdges() const = 0;
/*! \brief Sets pointers to this process' graph entries.
\param vertexIds will on return a pointer to vertex global Ids
*/
virtual void getVertexIDsView(const gno_t *&vertexIds) const = 0;
/*! \brief Gets adjacency lists for all vertices in a compressed
sparse row (CSR) format.
\param offsets is an array of size getLocalNumVertices() + 1.
The neighboring vertices for vertexId[i]
begin at adjIds[offsets[i]].
The last element of offsets is the size of the adjIds array.
\param adjIds on return will point to the array of adjacent vertices for
for each vertex.
*/
virtual void getEdgesView(const lno_t *&offsets,
const gno_t *&adjIds) const = 0;
/*! \brief Returns the number (0 or greater) of weights per vertex
*/
virtual int getNumWeightsPerVertex() const { return 0; }
/*! \brief Provide a pointer to the vertex weights, if any.
\param weights is the list of weights of the given index for
the vertices returned in getVertexIDsView().
\param stride The k'th weight is located at weights[stride*k]
\param idx ranges from zero to one less than getNumWeightsPerVertex().
*/
virtual void getVertexWeightsView(const scalar_t *&weights, int &stride,
int idx = 0) const
{
weights = NULL;
stride = 0;
Z2_THROW_NOT_IMPLEMENTED
}
/*! \brief Indicate whether vertex weight with index idx should be the
* global degree of the vertex
*/
virtual bool useDegreeAsVertexWeight(int idx) const
{
return false;
}
/*! \brief Returns the number (0 or greater) of edge weights.
*/
virtual int getNumWeightsPerEdge() const { return 0; }
/*! \brief Provide a pointer to the edge weights, if any.
\param weights is the list of weights of the given index for
the edges returned in getEdgeView().
\param stride The k'th weight is located at weights[stride*k]
\param idx ranges from zero to one less than getNumWeightsPerEdge().
*/
virtual void getEdgeWeightsView(const scalar_t *&weights, int &stride,
int idx = 0) const
{
weights = NULL;
stride = 0;
Z2_THROW_NOT_IMPLEMENTED
}
/*! \brief Allow user to provide additional data that contains coordinate
* info associated with the MatrixAdapter's primaryEntityType.
* Associated data must have the same parallel distribution and
* ordering of entries as the primaryEntityType.
*
* \param coordData is a pointer to a VectorAdapter with the user's
* coordinate data.
*/
void setCoordinateInput(VectorAdapter<UserCoord> *coordData)
{
coordinateInput_ = coordData;
haveCoordinateInput_ = true;
}
/*! \brief Indicate whether coordinate information has been set for this
* MatrixAdapter
*/
bool coordinatesAvailable() const { return haveCoordinateInput_; }
/*! \brief Obtain the coordinate data registered by the user.
* \return pointer a VectorAdapter with the user's coordinate data.
*/
VectorAdapter<UserCoord> *getCoordinateInput() const
{
return coordinateInput_;
}
////////////////////////////////////////////////////////////////////////////
// Implementations of base-class methods
/*! \brief Returns the entity to be partitioned, ordered, colored, etc.
* Valid values are GRAPH_VERTEX or GRAPH_EDGE.
*/
inline enum GraphEntityType getPrimaryEntityType() const {
return this->primaryEntityType;
}
/*! \brief Sets the primary entity type. Called by algorithm based on
* parameter value in parameter list from application.
* Also sets to adjacencyEntityType to something reasonable: opposite of
* primaryEntityType.
*/
void setPrimaryEntityType(std::string typestr) {
if (typestr == "vertex") {
this->primaryEntityType = GRAPH_VERTEX;
this->adjacencyEntityType = GRAPH_EDGE;
}
else if (typestr == "edge") {
this->primaryEntityType = GRAPH_EDGE;
this->adjacencyEntityType = GRAPH_VERTEX;
}
else {
std::ostringstream emsg;
emsg << __FILE__ << "," << __LINE__
<< " error: Invalid GraphEntityType " << typestr << std::endl;
emsg << "Valid values are 'vertex' and 'edge'" << std::endl;
throw std::runtime_error(emsg.str());
}
}
/*! \brief Returns the entity that describes adjacencies between the
* entities to be partitioned, ordered, colored, etc.
* Valid values are GRAPH_VERTEX or GRAPH_EDGE.
*/
inline enum GraphEntityType getAdjacencyEntityType() const {
return this->adjacencyEntityType;
}
/*! \brief Sets the adjacency entity type. Called by algorithm based on
* parameter value in parameter list from application.
* Also sets to primaryEntityType to something reasonable: opposite of
* adjacencyEntityType.
*/
void setAdjacencyEntityType(std::string typestr) {
if (typestr == "vertex") {
this->adjacencyEntityType = GRAPH_VERTEX;
this->primaryEntityType = GRAPH_EDGE;
}
else if (typestr == "edge") {
this->adjacencyEntityType = GRAPH_EDGE;
this->primaryEntityType = GRAPH_VERTEX;
}
else {
std::ostringstream emsg;
emsg << __FILE__ << "," << __LINE__
<< " error: Invalid GraphEntityType " << typestr << std::endl;
emsg << "Valid values are 'vertex' and 'edge'" << std::endl;
throw std::runtime_error(emsg.str());
}
}
// Functions from the BaseAdapter interface
size_t getLocalNumIDs() const {
if (getPrimaryEntityType() == GRAPH_VERTEX)
return getLocalNumVertices();
else
return getLocalNumEdges();
}
void getIDsView(const gno_t *&Ids) const {
if (getPrimaryEntityType() == GRAPH_VERTEX)
getVertexIDsView(Ids);
else {
// TODO: Need getEdgeIDsView? What is an Edge ID?
// TODO: std::pair<gno_t, gno_t>?
std::ostringstream emsg;
emsg << __FILE__ << "," << __LINE__
<< " error: getIDsView not yet supported for graph edges."
<< std::endl;
throw std::runtime_error(emsg.str());
}
}
int getNumWeightsPerID() const {
if (getPrimaryEntityType() == GRAPH_VERTEX)
return getNumWeightsPerVertex();
else
return getNumWeightsPerEdge();
}
void getWeightsView(const scalar_t *&wgt, int &stride, int idx = 0) const {
if (getPrimaryEntityType() == GRAPH_VERTEX)
getVertexWeightsView(wgt, stride, idx);
else {
// TODO: Need getEdgeWeightsView that lets Edges be primary object?
// TODO: That is, get edge weights based on some Edge ID.
std::ostringstream emsg;
emsg << __FILE__ << "," << __LINE__
<< " error: getWeightsView not yet supported for graph edges."
<< std::endl;
throw std::runtime_error(emsg.str());
}
}
bool useDegreeAsWeight(int idx) const
{
if (this->getPrimaryEntityType() == GRAPH_VERTEX)
return useDegreeAsVertexWeight(idx);
else {
std::ostringstream emsg;
emsg << __FILE__ << "," << __LINE__
<< " error: useDegreeAsWeight is supported only for vertices"
<< std::endl;
throw std::runtime_error(emsg.str());
}
}
};
} //namespace Zoltan2
#endif
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