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//
// ***********************************************************************
//
// Zoltan2: A package of combinatorial algorithms for scientific computing
// Copyright 2012 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
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//
// 1. Redistributions of source code must retain the above copyright
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// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
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// @HEADER
#ifndef _ZOLTAN2_ALGSCOTCH_HPP_
#define _ZOLTAN2_ALGSCOTCH_HPP_
#include <Zoltan2_GraphModel.hpp>
#include <Zoltan2_Algorithm.hpp>
#include <Zoltan2_PartitioningSolution.hpp>
#include <Zoltan2_OrderingSolution.hpp> // BDD: needed by ordering method
#include <Zoltan2_Util.hpp>
#include <Zoltan2_TPLTraits.hpp>
////////////////////////////////////////////////////////////////////////
//! \file Zoltan2_AlgScotch.hpp
//! \brief interface to the Scotch third-party library
////////////////////////////////////////////////////////////////////////
namespace Zoltan2 {
// this function called by the two scotch types below
static inline void getScotchParameters(Teuchos::ParameterList & pl)
{
// bool parameter
pl.set("scotch_verbose", false, "verbose output",
Environment::getBoolValidator());
RCP<Teuchos::EnhancedNumberValidator<int>> scotch_level_Validator =
Teuchos::rcp( new Teuchos::EnhancedNumberValidator<int>(0, 1000, 1, 0) );
pl.set("scotch_level", 0, "scotch ordering - Level of the subgraph in the "
"separators tree for the initial graph at the root of the tree",
scotch_level_Validator);
pl.set("scotch_imbalance_ratio", 0.2, "scotch ordering - Dissection "
"imbalance ratio", Environment::getAnyDoubleValidator());
// bool parameter
pl.set("scotch_ordering_default", true, "use default scotch ordering "
"strategy", Environment::getBoolValidator());
pl.set("scotch_ordering_strategy", "", "scotch ordering - Dissection "
"imbalance ratio");
}
} // Zoltan2 namespace
#ifndef HAVE_ZOLTAN2_SCOTCH
namespace Zoltan2 {
// Error handling for when Scotch is requested
// but Zoltan2 not built with Scotch.
template <typename Adapter>
class AlgPTScotch : public Algorithm<Adapter>
{
public:
typedef typename Adapter::base_adapter_t base_adapter_t;
//AlgPTScotch(const RCP<const Environment> &env,
// const RCP<const Comm<int> > &problemComm,
// const RCP<GraphModel<typename Adapter::base_adapter_t> > &model
//) BDD: old inteface for reference
AlgPTScotch(const RCP<const Environment> &env,
const RCP<const Comm<int> > &problemComm,
const RCP<const base_adapter_t> &adapter
)
{
throw std::runtime_error(
"BUILD ERROR: Scotch requested but not compiled into Zoltan2.\n"
"Please set CMake flag Zoltan2_ENABLE_Scotch:BOOL=ON.");
}
/*! \brief Set up validators specific to this algorithm
*/
static void getValidParameters(ParameterList & pl)
{
getScotchParameters(pl);
}
};
}
#endif
////////////////////////////////////////////////////////////////////////
////////////////////////////////////////////////////////////////////////
#ifdef HAVE_ZOLTAN2_SCOTCH
namespace Zoltan2 {
// stdint.h for int64_t in scotch header
#include <stdint.h>
extern "C" {
#ifndef HAVE_ZOLTAN2_MPI
#include "scotch.h"
#else
#include "ptscotch.h"
#endif
}
#ifdef SHOW_ZOLTAN2_SCOTCH_MEMORY
//
// Scotch keeps track of memory high water mark, but doesn't
// provide a way to get that number. So add this function:
// "size_t SCOTCH_getMemoryMax() { return memorymax;}"
// to src/libscotch/common_memory.c
//
// and this macro:
// "#define HAVE_SCOTCH_GETMEMORYMAX
// to include/ptscotch.h
//
// and compile scotch with -DCOMMON_MEMORY_TRACE
//
#ifdef HAVE_SCOTCH_GETMEMORYMAX
extern "C"{
extern size_t SCOTCH_getMemoryMax();
}
#else
#error "Either turn off ZOLTAN2_ENABLE_SCOTCH_MEMORY_REPORT in cmake configure, or see SHOW_ZOLTAN2_SCOTCH_MEMORY comment in Zoltan2_AlgScotch.hpp"
#endif // HAVE_SCOTCH_GETMEMORYMAX
#endif // SHOW_ZOLTAN2_SCOTCH_MEMORY
template <typename Adapter>
class AlgPTScotch : public Algorithm<Adapter>
{
public:
typedef typename Adapter::base_adapter_t base_adapter_t;
typedef GraphModel<typename Adapter::base_adapter_t> graphModel_t;
typedef typename Adapter::lno_t lno_t;
typedef typename Adapter::gno_t gno_t;
typedef typename Adapter::scalar_t scalar_t;
typedef typename Adapter::part_t part_t;
typedef typename Adapter::user_t user_t;
typedef typename Adapter::userCoord_t userCoord_t;
// /*! Scotch constructor
// * \param env parameters for the problem and library configuration
// * \param problemComm the communicator for the problem
// * \param model a graph
// *
// * Preconditions: The parameters in the environment have been processed.
// * TODO: THIS IS A MINIMAL CONSTRUCTOR FOR NOW.
// * TODO: WHEN ADD SCOTCH ORDERING OR MAPPING, MOVE SCOTCH GRAPH CONSTRUCTION
// * TODO: TO THE CONSTRUCTOR SO THAT CODE MAY BE SHARED.
// */
// AlgPTScotch(const RCP<const Environment> &env__,
// const RCP<const Comm<int> > &problemComm__,
// const RCP<graphModel_t> &model__) :
// env(env__), problemComm(problemComm__),
//#ifdef HAVE_ZOLTAN2_MPI
// mpicomm(Teuchos::getRawMpiComm(*problemComm__)),
//#endif
// model(model__) BDD: olde interface for reference
/*! Scotch constructor
* \param env parameters for the problem and library configuration
* \param problemComm the communicator for the problem
* \param adapter the user's input adapter
*
* We're building a graph model, so throw an error if we can't
* build the model from the input adapter passed to constructor
* For matrix and mesh adapters, additionally determine which
* objects we wish to partition
*/
AlgPTScotch(const RCP<const Environment> &env__,
const RCP<const Comm<int> > &problemComm__,
const RCP<const IdentifierAdapter<user_t> > &adapter__) :
env(env__), problemComm(problemComm__),
#ifdef HAVE_ZOLTAN2_MPI
mpicomm(Teuchos::getRawMpiComm(*problemComm__)),
#endif
adapter(adapter__)
{
std::string errStr = "cannot build GraphModel from IdentifierAdapter, ";
errStr += "Scotch requires Graph, Matrix, or Mesh Adapter";
throw std::runtime_error(errStr);
}
AlgPTScotch(const RCP<const Environment> &env__,
const RCP<const Comm<int> > &problemComm__,
const RCP<const VectorAdapter<user_t> > &adapter__) :
env(env__), problemComm(problemComm__),
#ifdef HAVE_ZOLTAN2_MPI
mpicomm(Teuchos::getRawMpiComm(*problemComm__)),
#endif
adapter(adapter__)
{
std::string errStr = "cannot build GraphModel from IdentifierAdapter, ";
errStr += "Scotch requires Graph, Matrix, or Mesh Adapter";
throw std::runtime_error(errStr);
}
AlgPTScotch(const RCP<const Environment> &env__,
const RCP<const Comm<int> > &problemComm__,
const RCP<const GraphAdapter<user_t, userCoord_t> > &adapter__) :
env(env__), problemComm(problemComm__),
#ifdef HAVE_ZOLTAN2_MPI
mpicomm(Teuchos::getRawMpiComm(*problemComm__)),
#endif
adapter(adapter__), model_flags()
{
this->model_flags.reset();
}
AlgPTScotch(const RCP<const Environment> &env__,
const RCP<const Comm<int> > &problemComm__,
const RCP<const MatrixAdapter<user_t, userCoord_t> > &adapter__) :
env(env__), problemComm(problemComm__),
#ifdef HAVE_ZOLTAN2_MPI
mpicomm(Teuchos::getRawMpiComm(*problemComm__)),
#endif
adapter(adapter__), model_flags()
{
this->model_flags.reset();
const ParameterList &pl = env->getParameters();
const Teuchos::ParameterEntry *pe;
std::string defString("default");
std::string objectOfInterest(defString);
pe = pl.getEntryPtr("objects_to_partition");
if (pe)
objectOfInterest = pe->getValue<std::string>(&objectOfInterest);
if (objectOfInterest == defString ||
objectOfInterest == std::string("matrix_rows") )
this->model_flags.set(VERTICES_ARE_MATRIX_ROWS);
else if (objectOfInterest == std::string("matrix_columns"))
this->model_flags.set(VERTICES_ARE_MATRIX_COLUMNS);
else if (objectOfInterest == std::string("matrix_nonzeros"))
this->model_flags.set(VERTICES_ARE_MATRIX_NONZEROS);
}
AlgPTScotch(const RCP<const Environment> &env__,
const RCP<const Comm<int> > &problemComm__,
const RCP<const MeshAdapter<user_t> > &adapter__) :
env(env__), problemComm(problemComm__),
#ifdef HAVE_ZOLTAN2_MPI
mpicomm(Teuchos::getRawMpiComm(*problemComm__)),
#endif
adapter(adapter__), model_flags()
{
this->model_flags.reset();
const ParameterList &pl = env->getParameters();
const Teuchos::ParameterEntry *pe;
std::string defString("default");
std::string objectOfInterest(defString);
pe = pl.getEntryPtr("objects_to_partition");
if (pe)
objectOfInterest = pe->getValue<std::string>(&objectOfInterest);
if (objectOfInterest == defString ||
objectOfInterest == std::string("mesh_nodes") )
this->model_flags.set(VERTICES_ARE_MESH_NODES);
else if (objectOfInterest == std::string("mesh_elements"))
this->model_flags.set(VERTICES_ARE_MESH_ELEMENTS);
}
/*! \brief Set up validators specific to this algorithm
*/
static void getValidParameters(ParameterList & pl)
{
getScotchParameters(pl);
}
void partition(const RCP<PartitioningSolution<Adapter> > &solution);
int localOrder(const RCP<LocalOrderingSolution<lno_t> > &solution);
int globalOrder(const RCP<GlobalOrderingSolution<gno_t> > &solution);
private:
const RCP<const Environment> env;
const RCP<const Comm<int> > problemComm;
#ifdef HAVE_ZOLTAN2_MPI
const MPI_Comm mpicomm;
#endif
const RCP<const base_adapter_t> adapter;
modelFlag_t model_flags;
RCP<graphModel_t > model; // BDD:to be constructed
void buildModel(bool isLocal);
void scale_weights(size_t n, StridedData<lno_t, scalar_t> &fwgts,
SCOTCH_Num *iwgts);
static int setStrategy(SCOTCH_Strat * c_strat_ptr, const ParameterList &pList, int procRank);
};
/////////////////////////////////////////////////////////////////////////////
template <typename Adapter>
void AlgPTScotch<Adapter>::buildModel(bool isLocal) {
HELLO;
const ParameterList &pl = env->getParameters();
const Teuchos::ParameterEntry *pe;
std::string defString("default");
std::string symParameter(defString);
pe = pl.getEntryPtr("symmetrize_graph");
if (pe){
symParameter = pe->getValue<std::string>(&symParameter);
if (symParameter == std::string("transpose"))
this->model_flags.set(SYMMETRIZE_INPUT_TRANSPOSE);
else if (symParameter == std::string("bipartite"))
this->model_flags.set(SYMMETRIZE_INPUT_BIPARTITE); }
bool sgParameter = false;
pe = pl.getEntryPtr("subset_graph");
if (pe)
sgParameter = pe->getValue(&sgParameter);
if (sgParameter)
this->model_flags.set(BUILD_SUBSET_GRAPH);
this->model_flags.set(REMOVE_SELF_EDGES);
this->model_flags.set(GENERATE_CONSECUTIVE_IDS);
if (isLocal) {
HELLO; // only for ordering!
this->model_flags.set(BUILD_LOCAL_GRAPH);
}
this->env->debug(DETAILED_STATUS, " building graph model");
this->model = rcp(new graphModel_t(this->adapter,
this->env,
this->problemComm,
this->model_flags));
this->env->debug(DETAILED_STATUS, " graph model built");
}
template <typename Adapter>
void AlgPTScotch<Adapter>::partition(
const RCP<PartitioningSolution<Adapter> > &solution
)
{
HELLO;
this->buildModel(false);
size_t numGlobalParts = solution->getTargetGlobalNumberOfParts();
SCOTCH_Num partnbr=0;
TPL_Traits<SCOTCH_Num, size_t>::ASSIGN(partnbr, numGlobalParts);
#ifdef HAVE_ZOLTAN2_MPI
int ierr = 0;
int me = problemComm->getRank();
const SCOTCH_Num baseval = 0; // Base value for array indexing.
// GraphModel returns GNOs from base 0.
SCOTCH_Strat stratstr; // Strategy string
// TODO: Set from parameters
SCOTCH_stratInit(&stratstr);
// Allocate and initialize PTScotch Graph data structure.
SCOTCH_Dgraph *gr = SCOTCH_dgraphAlloc(); // Scotch distributed graph
ierr = SCOTCH_dgraphInit(gr, mpicomm);
env->globalInputAssertion(__FILE__, __LINE__, "SCOTCH_dgraphInit",
!ierr, BASIC_ASSERTION, problemComm);
// Get vertex info
ArrayView<const gno_t> vtxID;
ArrayView<StridedData<lno_t, scalar_t> > vwgts;
size_t nVtx = model->getVertexList(vtxID, vwgts);
SCOTCH_Num vertlocnbr=0;
TPL_Traits<SCOTCH_Num, size_t>::ASSIGN(vertlocnbr, nVtx);
SCOTCH_Num vertlocmax = vertlocnbr; // Assumes no holes in global nums.
// Get edge info
ArrayView<const gno_t> edgeIds;
ArrayView<const lno_t> offsets;
ArrayView<StridedData<lno_t, scalar_t> > ewgts;
size_t nEdge = model->getEdgeList(edgeIds, offsets, ewgts);
SCOTCH_Num edgelocnbr=0;
TPL_Traits<SCOTCH_Num, size_t>::ASSIGN(edgelocnbr, nEdge);
const SCOTCH_Num edgelocsize = edgelocnbr; // Assumes adj array is compact.
SCOTCH_Num *vertloctab; // starting adj/vtx
TPL_Traits<SCOTCH_Num, const lno_t>::ASSIGN_ARRAY(&vertloctab, offsets);
SCOTCH_Num *edgeloctab; // adjacencies
TPL_Traits<SCOTCH_Num, const gno_t>::ASSIGN_ARRAY(&edgeloctab, edgeIds);
// We don't use these arrays, but we need them as arguments to Scotch.
SCOTCH_Num *vendloctab = NULL; // Assume consecutive storage for adj
SCOTCH_Num *vlblloctab = NULL; // Vertex label array
SCOTCH_Num *edgegsttab = NULL; // Array for ghost vertices
// Get weight info.
SCOTCH_Num *velotab = NULL; // Vertex weights
SCOTCH_Num *edlotab = NULL; // Edge weights
int nVwgts = model->getNumWeightsPerVertex();
int nEwgts = model->getNumWeightsPerEdge();
if (nVwgts > 1 && me == 0) {
std::cerr << "Warning: NumWeightsPerVertex is " << nVwgts
<< " but Scotch allows only one weight. "
<< " Zoltan2 will use only the first weight per vertex."
<< std::endl;
}
if (nEwgts > 1 && me == 0) {
std::cerr << "Warning: NumWeightsPerEdge is " << nEwgts
<< " but Scotch allows only one weight. "
<< " Zoltan2 will use only the first weight per edge."
<< std::endl;
}
if (nVwgts) {
velotab = new SCOTCH_Num[nVtx+1]; // +1 since Scotch wants all procs
// to have non-NULL arrays
scale_weights(nVtx, vwgts[0], velotab);
}
if (nEwgts) {
edlotab = new SCOTCH_Num[nEdge+1]; // +1 since Scotch wants all procs
// to have non-NULL arrays
scale_weights(nEdge, ewgts[0], edlotab);
}
// Build PTScotch distributed data structure
ierr = SCOTCH_dgraphBuild(gr, baseval, vertlocnbr, vertlocmax,
vertloctab, vendloctab, velotab, vlblloctab,
edgelocnbr, edgelocsize,
edgeloctab, edgegsttab, edlotab);
env->globalInputAssertion(__FILE__, __LINE__, "SCOTCH_dgraphBuild",
!ierr, BASIC_ASSERTION, problemComm);
// Create array for Scotch to return results in.
SCOTCH_Num *partloctab = new SCOTCH_Num[nVtx+1];
// Note: Scotch does not like NULL arrays, so add 1 to always have non-null.
// ParMETIS has this same "feature." See Zoltan bug 4299.
// Get target part sizes
float *partsizes = new float[numGlobalParts];
if (!solution->criteriaHasUniformPartSizes(0))
for (size_t i=0; i<numGlobalParts; i++)
partsizes[i] = solution->getCriteriaPartSize(0, i);
else
for (size_t i=0; i<numGlobalParts; i++)
partsizes[i] = 1.0 / float(numGlobalParts);
// Allocate and initialize PTScotch target architecture data structure
SCOTCH_Arch archdat;
SCOTCH_archInit(&archdat);
SCOTCH_Num velosum = 0;
SCOTCH_dgraphSize (gr, &velosum, NULL, NULL, NULL);
SCOTCH_Num *goalsizes = new SCOTCH_Num[partnbr];
// TODO: The goalsizes are set as in Zoltan; not sure it is correct there
// or here.
// It appears velosum is global NUMBER of vertices, not global total
// vertex weight. I think we should use the latter.
// Fix this when we add vertex weights.
for (SCOTCH_Num i = 0; i < partnbr; i++)
goalsizes[i] = SCOTCH_Num(ceil(velosum * partsizes[i]));
delete [] partsizes;
SCOTCH_archCmpltw(&archdat, partnbr, goalsizes);
// Call partitioning; result returned in partloctab.
ierr = SCOTCH_dgraphMap(gr, &archdat, &stratstr, partloctab);
env->globalInputAssertion(__FILE__, __LINE__, "SCOTCH_dgraphMap",
!ierr, BASIC_ASSERTION, problemComm);
SCOTCH_archExit(&archdat);
delete [] goalsizes;
// TODO - metrics
#ifdef SHOW_ZOLTAN2_SCOTCH_MEMORY
int me = env->comm_->getRank();
#endif
#ifdef HAVE_SCOTCH_ZOLTAN2_GETMEMORYMAX
if (me == 0){
size_t scotchBytes = SCOTCH_getMemoryMax();
std::cout << "Rank " << me << ": Maximum bytes used by Scotch: ";
std::cout << scotchBytes << std::endl;
}
#endif
// Clean up PTScotch
SCOTCH_dgraphExit(gr);
free(gr);
SCOTCH_stratExit(&stratstr);
// Load answer into the solution.
ArrayRCP<part_t> partList;
if (nVtx > 0)
TPL_Traits<part_t, SCOTCH_Num>::SAVE_ARRAYRCP(&partList, partloctab, nVtx);
TPL_Traits<SCOTCH_Num, part_t>::DELETE_ARRAY(&partloctab);
solution->setParts(partList);
env->memory("Zoltan2-Scotch: After creating solution");
// Clean up copies made due to differing data sizes.
TPL_Traits<SCOTCH_Num, lno_t>::DELETE_ARRAY(&vertloctab);
TPL_Traits<SCOTCH_Num, gno_t>::DELETE_ARRAY(&edgeloctab);
if (nVwgts) delete [] velotab;
if (nEwgts) delete [] edlotab;
#else // DO NOT HAVE MPI
// TODO: Handle serial case with calls to Scotch.
// TODO: For now, assign everything to rank 0 and assume only one part.
// TODO: Can probably use the code above for loading solution,
// TODO: instead of duplicating it here.
// TODO
// TODO: Actual logic should call Scotch when number of processes == 1.
ArrayView<const gno_t> vtxID;
ArrayView<StridedData<lno_t, scalar_t> > vwgts;
size_t nVtx = model->getVertexList(vtxID, vwgts);
ArrayRCP<part_t> partList(new part_t[nVtx], 0, nVtx, true);
for (size_t i = 0; i < nVtx; i++) partList[i] = 0;
solution->setParts(partList);
#endif // DO NOT HAVE MPI
}
/////////////////////////////////////////////////////////////////////////////
// Scale and round scalar_t weights (typically float or double) to
// SCOTCH_Num (typically int or long).
// subject to sum(weights) <= max_wgt_sum.
// Only scale if deemed necessary.
//
// Note that we use ceil() instead of round() to avoid
// rounding to zero weights.
// Based on Zoltan's scale_round_weights, mode 1.
template <typename Adapter>
void AlgPTScotch<Adapter>::scale_weights(
size_t n,
StridedData<typename Adapter::lno_t, typename Adapter::scalar_t> &fwgts,
SCOTCH_Num *iwgts
)
{
const double INT_EPSILON = 1e-5;
SCOTCH_Num nonint, nonint_local = 0;
double sum_wgt, sum_wgt_local = 0.;
double max_wgt, max_wgt_local = 0.;
// Compute local sums of the weights
// Check whether all weights are integers
for (size_t i = 0; i < n; i++) {
double fw = double(fwgts[i]);
if (!nonint_local){
SCOTCH_Num tmp = (SCOTCH_Num) floor(fw + .5); /* Nearest int */
if (fabs((double)tmp-fw) > INT_EPSILON) {
nonint_local = 1;
}
}
sum_wgt_local += fw;
if (fw > max_wgt_local) max_wgt_local = fw;
}
Teuchos::reduceAll<int,SCOTCH_Num>(*problemComm, Teuchos::REDUCE_MAX, 1,
&nonint_local, &nonint);
Teuchos::reduceAll<int,double>(*problemComm, Teuchos::REDUCE_SUM, 1,
&sum_wgt_local, &sum_wgt);
Teuchos::reduceAll<int,double>(*problemComm, Teuchos::REDUCE_MAX, 1,
&max_wgt_local, &max_wgt);
double scale = 1.;
const double max_wgt_sum = double(SCOTCH_NUMMAX/8);
// Scaling needed if weights are not integers or weights'
// range is not sufficient
if (nonint || (max_wgt <= INT_EPSILON) || (sum_wgt > max_wgt_sum)) {
/* Calculate scale factor */
if (sum_wgt != 0.) scale = max_wgt_sum/sum_wgt;
}
/* Convert weights to positive integers using the computed scale factor */
for (size_t i = 0; i < n; i++)
iwgts[i] = (SCOTCH_Num) ceil(double(fwgts[i])*scale);
}
template <typename Adapter>
int AlgPTScotch<Adapter>::setStrategy(SCOTCH_Strat * c_strat_ptr, const ParameterList &pList, int procRank) {
// get ordering parameters from parameter list
bool bPrintOutput = false; // will be true if rank 0 and verbose is true
const Teuchos::ParameterEntry *pe;
if (procRank == 0) {
pe = pList.getEntryPtr("scotch_verbose");
if (pe) {
bPrintOutput = pe->getValue(&bPrintOutput);
}
}
// get parameter setting for ordering default true/false
bool scotch_ordering_default = true;
pe = pList.getEntryPtr("scotch_ordering_default");
if (pe) {
scotch_ordering_default = pe->getValue(&scotch_ordering_default);
}
if (bPrintOutput) {
std::cout <<
"Scotch: Ordering default setting (parameter: scotch_ordering_default): "
<< (scotch_ordering_default ? "True" : "False" ) << std::endl;
}
// set up error code for return
int ierr = 1; // will be set 0 if successful
if (scotch_ordering_default) {
// get parameter scotch_level
int scotch_level = 0;
pe = pList.getEntryPtr("scotch_level");
if (pe) {
scotch_level = pe->getValue(&scotch_level);
}
if (bPrintOutput) {
std::cout << "Scotch: Ordering level (parameter: scotch_level): " <<
scotch_level << std::endl;
}
// get parameter scotch_imbalance_ratio
double scotch_imbalance_ratio = 0.2;
pe = pList.getEntryPtr("scotch_imbalance_ratio");
if (pe) {
scotch_imbalance_ratio = pe->getValue(&scotch_imbalance_ratio);
}
if (bPrintOutput) {
std::cout << "Scotch: Ordering dissection imbalance ratio "
"(parameter: scotch_imbalance_ratio): "
<< scotch_imbalance_ratio << std::endl;
}
SCOTCH_stratInit(c_strat_ptr);
ierr = SCOTCH_stratGraphOrderBuild( c_strat_ptr,
SCOTCH_STRATLEVELMAX | SCOTCH_STRATLEVELMIN |
SCOTCH_STRATLEAFSIMPLE | SCOTCH_STRATSEPASIMPLE,
scotch_level, scotch_imbalance_ratio); // based on Siva's example
}
else {
// get parameter scotch_ordering_strategy
std::string scotch_ordering_strategy_string("");
pe = pList.getEntryPtr("scotch_ordering_strategy");
if (pe) {
scotch_ordering_strategy_string =
pe->getValue(&scotch_ordering_strategy_string);
}
if (bPrintOutput) {
std::cout << "Scotch ordering strategy"
" (parameter: scotch_ordering_strategy): " <<
scotch_ordering_strategy_string << std::endl;
}
SCOTCH_stratInit(c_strat_ptr);
ierr = SCOTCH_stratGraphOrder( c_strat_ptr,
scotch_ordering_strategy_string.c_str());
}
return ierr;
}
template <typename Adapter>
int AlgPTScotch<Adapter>::globalOrder(
const RCP<GlobalOrderingSolution<gno_t> > &solution) {
throw std::logic_error("AlgPTScotch does not yet support global ordering.");
}
template <typename Adapter>
int AlgPTScotch<Adapter>::localOrder(
const RCP<LocalOrderingSolution<lno_t> > &solution) {
// TODO: translate teuchos sublist parameters to scotch strategy string
// TODO: construct local graph model
// TODO: solve with scotch
// TODO: set solution fields
HELLO; // say hi so that we know we have called this method
int me = problemComm->getRank();
const ParameterList &pl = env->getParameters();
const Teuchos::ParameterEntry *pe;
bool isVerbose = false;
pe = pl.getEntryPtr("scotch_verbose");
if (pe)
isVerbose = pe->getValue(&isVerbose);
// build a local graph model
this->buildModel(true);
if (isVerbose && me==0) {
std::cout << "Built local graph model." << std::endl;
}
// based off of Siva's example
SCOTCH_Strat c_strat_ptr; // strategy
SCOTCH_Graph c_graph_ptr; // pointer to scotch graph
int ierr;
ierr = SCOTCH_graphInit( &c_graph_ptr);
if ( ierr != 0) {
throw std::runtime_error("Failed to initialize Scotch graph!");
} else if (isVerbose && me == 0) {
std::cout << "Initialized Scotch graph." << std::endl;
}
// Get vertex info
ArrayView<const gno_t> vtxID;
ArrayView<StridedData<lno_t, scalar_t> > vwgts;
size_t nVtx = model->getVertexList(vtxID, vwgts);
SCOTCH_Num vertnbr=0;
TPL_Traits<SCOTCH_Num, size_t>::ASSIGN(vertnbr, nVtx);
// Get edge info
ArrayView<const gno_t> edgeIds;
ArrayView<const lno_t> offsets;
ArrayView<StridedData<lno_t, scalar_t> > ewgts;
size_t nEdge = model->getEdgeList(edgeIds, offsets, ewgts);
SCOTCH_Num edgenbr=0;
TPL_Traits<SCOTCH_Num, size_t>::ASSIGN(edgenbr, nEdge);
SCOTCH_Num *verttab; // starting adj/vtx
TPL_Traits<SCOTCH_Num, const lno_t>::ASSIGN_ARRAY(&verttab, offsets);
SCOTCH_Num *edgetab; // adjacencies
TPL_Traits<SCOTCH_Num, const gno_t>::ASSIGN_ARRAY(&edgetab, edgeIds);
// We don't use these arrays, but we need them as arguments to Scotch.
SCOTCH_Num *vendtab = NULL; // Assume consecutive storage for adj
//SCOTCH_Num *vendtab = verttab+1; // Assume consecutive storage for adj
// Get weight info.
SCOTCH_Num *velotab = NULL; // Vertex weights
SCOTCH_Num *vlbltab = NULL; // vertes labels
SCOTCH_Num *edlotab = NULL; // Edge weights
int nVwgts = model->getNumWeightsPerVertex();
int nEwgts = model->getNumWeightsPerEdge();
if (nVwgts > 1 && me == 0) {
std::cerr << "Warning: NumWeightsPerVertex is " << nVwgts
<< " but Scotch allows only one weight. "
<< " Zoltan2 will use only the first weight per vertex."
<< std::endl;
}
if (nEwgts > 1 && me == 0) {
std::cerr << "Warning: NumWeightsPerEdge is " << nEwgts
<< " but Scotch allows only one weight. "
<< " Zoltan2 will use only the first weight per edge."
<< std::endl;
}
if (nVwgts) {
velotab = new SCOTCH_Num[nVtx+1]; // +1 since Scotch wants all procs
// to have non-NULL arrays
scale_weights(nVtx, vwgts[0], velotab);
}
if (nEwgts) {
edlotab = new SCOTCH_Num[nEdge+1]; // +1 since Scotch wants all procs
// to have non-NULL arrays
scale_weights(nEdge, ewgts[0], edlotab);
}
// build scotch graph
int baseval = 0;
ierr = 1;
ierr = SCOTCH_graphBuild( &c_graph_ptr, baseval,
vertnbr, verttab, vendtab, velotab, vlbltab,
edgenbr, edgetab, edlotab);
if (ierr != 0) {
throw std::runtime_error("Failed to build Scotch graph!");
} else if (isVerbose && me == 0) {
std::cout << "Built Scotch graph." << std::endl;
}
ierr = SCOTCH_graphCheck(&c_graph_ptr);
if (ierr != 0) {
throw std::runtime_error("Graph is inconsistent!");
} else if (isVerbose && me == 0) {
std::cout << "Graph is consistent." << std::endl;
}
// set the strategy
ierr = AlgPTScotch<Adapter>::setStrategy(&c_strat_ptr, pl, me);
if (ierr != 0) {
throw std::runtime_error("Can't build strategy!");
}else if (isVerbose && me == 0) {
std::cout << "Graphing strategy built." << std::endl;
}
// Allocate results
SCOTCH_Num cblk = 0;
SCOTCH_Num *permtab; // permutation array
SCOTCH_Num *peritab; // inverse permutation array
SCOTCH_Num *rangetab; // separator range array
SCOTCH_Num *treetab; // separator tree
if (TPL_Traits<lno_t, SCOTCH_Num>::OK_TO_CAST()) {
permtab = reinterpret_cast<SCOTCH_Num*>(solution->getPermutationView(false));
peritab = reinterpret_cast<SCOTCH_Num*>(solution->getPermutationView(true));
rangetab = reinterpret_cast<SCOTCH_Num*>(solution->getSeparatorRangeView());
treetab = reinterpret_cast<SCOTCH_Num*>(solution->getSeparatorTreeView());
}
else {
permtab = new SCOTCH_Num[nVtx];
peritab = new SCOTCH_Num[nVtx];
rangetab = new SCOTCH_Num[nVtx+1];
treetab = new SCOTCH_Num[nVtx];
}
ierr = SCOTCH_graphOrder(&c_graph_ptr, &c_strat_ptr, permtab, peritab,
&cblk, rangetab, treetab);
if (ierr != 0) {
throw std::runtime_error("Could not compute ordering!!");
} else if(isVerbose && me == 0) {
std::cout << "Ordering computed." << std::endl;
}
lno_t nSepBlocks;
TPL_Traits<lno_t, SCOTCH_Num>::ASSIGN(nSepBlocks, cblk);
solution->setNumSeparatorBlocks(nSepBlocks);
if (!TPL_Traits<lno_t, SCOTCH_Num>::OK_TO_CAST()) {
const ArrayRCP<lno_t> arv_perm = solution->getPermutationRCP(false);
for (size_t i = 0; i < nVtx; i++)
TPL_Traits<lno_t, SCOTCH_Num>::ASSIGN(arv_perm[i], permtab[i]);
delete [] permtab;
const ArrayRCP<lno_t> arv_peri = solution->getPermutationRCP(true);
for (size_t i = 0; i < nVtx; i++)
TPL_Traits<lno_t, SCOTCH_Num>::ASSIGN(arv_peri[i], peritab[i]);
delete [] peritab;
const ArrayRCP<lno_t> arv_range = solution->getSeparatorRangeRCP();
for (size_t i = 0; i <= nVtx; i++)
TPL_Traits<lno_t, SCOTCH_Num>::ASSIGN(arv_range[i], rangetab[i]);
delete [] rangetab;
const ArrayRCP<lno_t> arv_tree = solution->getSeparatorTreeRCP();
for (size_t i = 0; i < nVtx; i++)
TPL_Traits<lno_t, SCOTCH_Num>::ASSIGN(arv_tree[i], treetab[i]);
delete [] treetab;
}
solution->setHaveSeparator(true);
// reclaim memory
// Clean up copies made due to differing data sizes.
TPL_Traits<SCOTCH_Num, lno_t>::DELETE_ARRAY(&verttab);
TPL_Traits<SCOTCH_Num, gno_t>::DELETE_ARRAY(&edgetab);
if (nVwgts) delete [] velotab;
if (nEwgts) delete [] edlotab;
SCOTCH_stratExit(&c_strat_ptr);
SCOTCH_graphFree(&c_graph_ptr);
if (isVerbose && problemComm->getRank() == 0) {
std::cout << "Freed Scotch graph!" << std::endl;
}
return 0;
}
} // namespace Zoltan2
#endif // HAVE_ZOLTAN2_SCOTCH
////////////////////////////////////////////////////////////////////////
#endif
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