This file is indexed.

/usr/include/trilinos/Teko_PCDStrategy.hpp is in libtrilinos-teko-dev 12.12.1-5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
/*
// @HEADER
// 
// ***********************************************************************
// 
//      Teko: A package for block and physics based preconditioning
//                  Copyright 2010 Sandia Corporation 
//  
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//  
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//  
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//  
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//  
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission. 
//  
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING 
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//  
// Questions? Contact Eric C. Cyr (eccyr@sandia.gov)
// 
// ***********************************************************************
// 
// @HEADER

*/

#ifndef __Teko_PCDStrategy_hpp__
#define __Teko_PCDStrategy_hpp__

#include "Teko_LU2x2Strategy.hpp"

// Teuchos includes
#include "Teuchos_Time.hpp"

namespace Teko {
namespace NS {

/** @brief Strategy for computing implementation of the 
 *         Pressure convection diffusion preconditioner.
 *
 * This requires the user to add a "PCD Operator", 
 * "Pressure Laplace Operator" and "Press Mass Operators"
 * into the preconditioner state. The user is notified by
 * boolean fields returned from the requested paramters list.
 */
class PCDStrategy : public LU2x2Strategy {
public:
   //! default Constructor 
   PCDStrategy();

   //! Constructor to set the inverse factories.
   PCDStrategy(const Teuchos::RCP<InverseFactory> & invFA,
                         const Teuchos::RCP<InverseFactory> & invS);

   //! Destructor (does nothing)
   virtual ~PCDStrategy() {}

   /** returns the first (approximate) inverse of \f$A_{00}\f$ */
   virtual const Teko::LinearOp
   getHatInvA00(const Teko::BlockedLinearOp & A,BlockPreconditionerState & state) const;

   /** returns the second (approximate) inverse of \f$A_{00}\f$ */
   virtual const Teko::LinearOp
   getTildeInvA00(const Teko::BlockedLinearOp & A,BlockPreconditionerState & state) const;

   /** returns an (approximate) inverse of \f$S = -A_{11} + A_{10} \mbox{diag}(A_{00})^{-1} A_{01}\f$ */
   virtual const Teko::LinearOp
   getInvS(const Teko::BlockedLinearOp & A,BlockPreconditionerState & state) const;

   /** \brief This function builds the internals of the state from a parameter list.
     *        
     * \param[in] settings Parameter list to use as the internal settings
     * \param[in] invLib Inverse library to use for building inverse factory objects
     *
     * \note The default implementation does nothing.
     */
   virtual void initializeFromParameterList(const Teuchos::ParameterList & settings,
                                            const InverseLibrary & invLib);

   /** \brief Request the additional parameters this preconditioner factory
     *        needs.
     *
     * Request the additonal parameters needed by this preconditioner factory.
     * The parameter list will have a set of fields that can be filled with
     * the requested values. These fields include all requirements, even those
     * of the sub-solvers if there are any.  Once correctly filled the object
     * can be updated by calling the updateRequestedParameters with the filled
     * parameter list.
     *
     * For the PCD strategy the following fields are required to be set to
     * true, they are passed to the user as false. The user acknowledges that
     * the operators are required by updating the parameters to true.
     * <ul>
     * <li><ParameterList name="PCD Operator" type="bool" value="false"/></li>
     * <li><ParameterList name="Pressure Laplace Operator" type="bool" value="false"/></li>
     * <li><ParameterList name="Pressure Mass Operator" type="bool" value="false"/></li>
     * </ul>
     *
     * \returns A parameter list with the requested parameters.
     *
     * \note The default implementation returns Teuchos::null.
     */
   virtual Teuchos::RCP<Teuchos::ParameterList> getRequestedParameters() const;

   /** \brief Update this object with the fields from a parameter list.
     *
     * Update the requested fields using a parameter list. This method is
     * expected to pair with the getRequestedParameters method (i.e. the fields
     * requested are going to be update using this method).
     *
     * For the PCD strategy the following fields are required to be set to
     * true. Essentially, the user is acknowledging that the operators are
     * required.
     * <ul>
     * <li><ParameterList name="PCD Operator" type="bool" value="true"/></li>
     * <li><ParameterList name="Pressure Laplace Operator" type="bool" value="true"/></li>
     * <li><ParameterList name="Pressure Mass Operator" type="bool" value="true"/></li>
     * </ul>
     *
     * \param[in] pl Parameter list containing the requested parameters.
     *
     * \returns If the method succeeded (found all its required parameters) this
     *          method returns true, otherwise it returns false.
     *
     * \note The default implementation returns true (it does nothing!).
     */
   virtual bool updateRequestedParameters(const Teuchos::ParameterList & pl);

protected:
   /** Build timers for this type of object.
     */
   static void buildTimers();

   /** Initialize the operator's state. This builds the Schur complement and the inverse
     * operators. If the state has already been initialized this method does nothing.
     *
     * \param[in] A Operator to intialize with.
     * \param[in] state Storage object for this operator.
     */
   void initializeState(const Teko::BlockedLinearOp & A,BlockPreconditionerState & state) const;

   // how to invert the matrices
   Teuchos::RCP<InverseFactory> invFactoryF_; // for \tilde{A_00}\f$
   Teuchos::RCP<InverseFactory> invFactoryS_;

   DiagonalType massInverseType_;

   //! Passed to application for construction of laplace operator
   Teuchos::RCP<Teuchos::ParameterList> lapParams_; 

   //! Passed to application for construction of PCD operator
   Teuchos::RCP<Teuchos::ParameterList> pcdParams_; 

   bool schurCompOrdering_;

   static Teuchos::RCP<Teuchos::Time> initTimer_;
   static Teuchos::RCP<Teuchos::Time> invSTimer_;
   static Teuchos::RCP<Teuchos::Time> invFTimer_;
   static Teuchos::RCP<Teuchos::Time> opsTimer_;

public:
   // some static functions for determining strings

   static std::string getPCDString() { return "PCD Operator"; }
   static std::string getPressureLaplaceString() { return "Pressure Laplace Operator"; }
   static std::string getPressureMassString() { return "Pressure Mass Matrix"; }
};

} // end namespace NS
} // end namespace Teko

#endif