This file is indexed.

/usr/include/trilinos/Rythmos_extractStateAndSens.hpp is in libtrilinos-rythmos-dev 12.12.1-5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
//@HEADER
// ***********************************************************************
//
//                     Rythmos Package
//                 Copyright (2006) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// This library is free software; you can redistribute it and/or modify
// it under the terms of the GNU Lesser General Public License as
// published by the Free Software Foundation; either version 2.1 of the
// License, or (at your option) any later version.
//
// This library is distributed in the hope that it will be useful, but
// WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// Lesser General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301
// USA
// Questions? Contact Todd S. Coffey (tscoffe@sandia.gov)
//
// ***********************************************************************
//@HEADER

#ifndef RYTHMOS_EXTRACT_STATE_AND_SENS_HPP
#define RYTHMOS_EXTRACT_STATE_AND_SENS_HPP


#include "Rythmos_Types.hpp"
#include "Thyra_DefaultMultiVectorProductVector.hpp"
#include "Thyra_ProductVectorBase.hpp"


namespace Rythmos {


/** \brief Extract the state and sensitivities from x_bar and x_bar_dot.
 *

 \verbatim

  x_bar = [ x ; s_bar ]

  x_bar_dot = [ x_dot; s_bar_dot ]

  s_bar = ..

  s_bar_dot = ...

 \endverbatim


 */
template<class Scalar>
void extractStateAndSens(
  const RCP<const Thyra::VectorBase<Scalar> > &x_bar,
  const RCP<const Thyra::VectorBase<Scalar> > &x_bar_dot,
  RCP<const Thyra::VectorBase<Scalar> > *x,
  RCP<const Thyra::MultiVectorBase<Scalar> > *S,
  RCP<const Thyra::VectorBase<Scalar> >  *x_dot,
  RCP<const Thyra::MultiVectorBase<Scalar> > *S_dot
  );


/** \brief Extract the state from x_bar and x_bar_dot.
 */
template<class Scalar>
void extractState(
  const RCP<const Thyra::VectorBase<Scalar> > &x_bar,
  const RCP<const Thyra::VectorBase<Scalar> > &x_bar_dot,
  RCP<const Thyra::VectorBase<Scalar> > *x,
  RCP<const Thyra::VectorBase<Scalar> >  *x_dot
  );


/** \brief Extract the sensitivities from x_bar and x_bar_dot.
 */
template<class Scalar>
void extractSens(
  const RCP<const Thyra::VectorBase<Scalar> > &x_bar,
  const RCP<const Thyra::VectorBase<Scalar> > &x_bar_dot,
  RCP<const Thyra::MultiVectorBase<Scalar> > *S,
  RCP<const Thyra::MultiVectorBase<Scalar> > *S_dot
  );


} // namespace Rythmos



//
// Implementations
//

namespace Rythmos {

namespace {


template<class Scalar>
void downcastStateAndSens(
  const RCP<const Thyra::VectorBase<Scalar> > &x_bar,
  const RCP<const Thyra::VectorBase<Scalar> > &x_bar_dot,
  RCP<const Thyra::ProductVectorBase<Scalar> > &x_bar_pv,
  RCP<const Thyra::ProductVectorBase<Scalar> > &x_bar_dot_pv
  )
{
  using Teuchos::rcp_dynamic_cast;

  TEUCHOS_TEST_FOR_EXCEPT(is_null(x_bar));
  x_bar_pv = Thyra::productVectorBase<Scalar>(x_bar);

  TEUCHOS_TEST_FOR_EXCEPT(is_null(x_bar_dot));
  x_bar_dot_pv = Thyra::productVectorBase<Scalar>(x_bar_dot);
}


template<class Scalar>
void extractStateBlock(
  const RCP<const Thyra::ProductVectorBase<Scalar> > &x_bar_pv,
  const RCP<const Thyra::ProductVectorBase<Scalar> > &x_bar_dot_pv,
  RCP<const Thyra::VectorBase<Scalar> > *x,
  RCP<const Thyra::VectorBase<Scalar> > *x_dot
  )
{
  TEUCHOS_TEST_FOR_EXCEPT(0==x);
  *x = x_bar_pv->getVectorBlock(0);

  TEUCHOS_TEST_FOR_EXCEPT(0==x_dot);
  *x_dot = x_bar_dot_pv->getVectorBlock(0);
}


template<class Scalar>
void extractSensBlock(
  const RCP<const Thyra::ProductVectorBase<Scalar> > &x_bar_pv,
  const RCP<const Thyra::ProductVectorBase<Scalar> > &x_bar_dot_pv,
  RCP<const Thyra::MultiVectorBase<Scalar> > *S,
  RCP<const Thyra::MultiVectorBase<Scalar> > *S_dot)
{
  using Teuchos::rcp_dynamic_cast;

  TEUCHOS_TEST_FOR_EXCEPT(0==S);
  const RCP<const Thyra::DefaultMultiVectorProductVector<Scalar> >
    s_bar = rcp_dynamic_cast<const Thyra::DefaultMultiVectorProductVector<Scalar> >(
        x_bar_pv->getVectorBlock(1).assert_not_null(), true
        );
  *S = s_bar->getMultiVector();

  TEUCHOS_TEST_FOR_EXCEPT(0==S_dot);
  const RCP<const Thyra::DefaultMultiVectorProductVector<Scalar> >
    s_bar_dot = rcp_dynamic_cast<const Thyra::DefaultMultiVectorProductVector<Scalar> >(
        x_bar_dot_pv->getVectorBlock(1).assert_not_null(), true
        );
  *S_dot = s_bar_dot->getMultiVector();
}


} // anonymous namespace

} // namespace Rythmos


template<class Scalar>
void Rythmos::extractStateAndSens(
  const RCP<const Thyra::VectorBase<Scalar> > &x_bar,
  const RCP<const Thyra::VectorBase<Scalar> > &x_bar_dot,
  RCP<const Thyra::VectorBase<Scalar> > *x,
  RCP<const Thyra::MultiVectorBase<Scalar> > *S,
  RCP<const Thyra::VectorBase<Scalar> >  *x_dot,
  RCP<const Thyra::MultiVectorBase<Scalar> > *S_dot
  )
{
  RCP<const Thyra::ProductVectorBase<Scalar> > x_bar_pv, x_bar_dot_pv;
  downcastStateAndSens(x_bar, x_bar_dot, x_bar_pv, x_bar_dot_pv);

  extractStateBlock(x_bar_pv, x_bar_dot_pv, x, x_dot);
  extractSensBlock(x_bar_pv, x_bar_dot_pv, S, S_dot);
}


template<class Scalar>
void Rythmos::extractState(
  const RCP<const Thyra::VectorBase<Scalar> > &x_bar,
  const RCP<const Thyra::VectorBase<Scalar> > &x_bar_dot,
  RCP<const Thyra::VectorBase<Scalar> > *x,
  RCP<const Thyra::VectorBase<Scalar> >  *x_dot
  )
{
  RCP<const Thyra::ProductVectorBase<Scalar> > x_bar_pv, x_bar_dot_pv;
  downcastStateAndSens(x_bar, x_bar_dot, x_bar_pv, x_bar_dot_pv);

  extractStateBlock(x_bar_pv, x_bar_dot_pv, x, x_dot);
}


template<class Scalar>
void Rythmos::extractSens(
  const RCP<const Thyra::VectorBase<Scalar> > &x_bar,
  const RCP<const Thyra::VectorBase<Scalar> > &x_bar_dot,
  RCP<const Thyra::MultiVectorBase<Scalar> > *S,
  RCP<const Thyra::MultiVectorBase<Scalar> > *S_dot
  )
{
  RCP<const Thyra::ProductVectorBase<Scalar> > x_bar_pv, x_bar_dot_pv;
  downcastStateAndSens(x_bar, x_bar_dot, x_bar_pv, x_bar_dot_pv);

  extractSensBlock(x_bar_pv, x_bar_dot_pv, S, S_dot);
}



#endif //RYTHMOS_EXTRACT_STATE_AND_SENS_HPP