This file is indexed.

/usr/include/trilinos/NOX_LAPACK_Group.H is in libtrilinos-nox-dev 12.12.1-5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
// $Id$
// $Source$

//@HEADER
// ************************************************************************
//
//            NOX: An Object-Oriented Nonlinear Solver Package
//                 Copyright (2002) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Roger Pawlowski (rppawlo@sandia.gov) or
// Eric Phipps (etphipp@sandia.gov), Sandia National Laboratories.
// ************************************************************************
//  CVS Information
//  $Source$
//  $Author$
//  $Date$
//  $Revision$
// ************************************************************************
//@HEADER

#ifndef NOX_LAPACK_GROUP_H
#define NOX_LAPACK_GROUP_H

#include "NOX_Abstract_Group.H"    // base class

#include "NOX_Common.H"             // class data element (std::string)
#include "NOX_LAPACK_Vector.H"        // class data element
#include "NOX_LAPACK_LinearSolver.H"        // class data element
#include "NOX_LAPACK_Interface.H"   // class data element

// Forward declares
namespace NOX {
  namespace Parameter {
    class List;
  }
}

namespace NOX {
  namespace LAPACK {

    //! A simple example of a group structure, based on BLAS/LAPACK.
    class Group : public virtual NOX::Abstract::Group {

    public:

      //! Constructor
      Group(Interface& i);

      //! Copy constructor
      Group(const NOX::LAPACK::Group& source, NOX::CopyType type = DeepCopy);

      //! Destructor.
      ~Group();


      NOX::Abstract::Group& operator=(const NOX::Abstract::Group& source);
      //! See above.
      NOX::Abstract::Group& operator=(const NOX::LAPACK::Group& source);

      /** @name "Compute" functions. */
      //@{

      void setX(const NOX::Abstract::Vector& y);
      //! See above
      void setX(const NOX::LAPACK::Vector& y);

      void computeX(const NOX::Abstract::Group& grp, const NOX::Abstract::Vector& d, double step);
      //! See above.
      void computeX(const NOX::LAPACK::Group& grp, const NOX::LAPACK::Vector& d, double step);

      NOX::Abstract::Group::ReturnType computeF();

      NOX::Abstract::Group::ReturnType computeJacobian();

      NOX::Abstract::Group::ReturnType computeGradient();

      NOX::Abstract::Group::ReturnType computeNewton(Teuchos::ParameterList& params);

      //@}

      /** @name Jacobian operations.
       *
       * Operations using the Jacobian matrix. These may not be defined in
       * matrix-free scenarios. */

      //@{

      NOX::Abstract::Group::ReturnType applyJacobian(const NOX::LAPACK::Vector& input,
                             NOX::LAPACK::Vector& result) const;

      //! See above
      NOX::Abstract::Group::ReturnType applyJacobian(const NOX::Abstract::Vector& input,
                             NOX::Abstract::Vector& result) const;

      NOX::Abstract::Group::ReturnType applyJacobianTranspose(const NOX::LAPACK::Vector& input,
                                  NOX::LAPACK::Vector& result) const;

      //! See above
      NOX::Abstract::Group::ReturnType applyJacobianTranspose(const NOX::Abstract::Vector& input,
                                  NOX::Abstract::Vector& result) const;

      NOX::Abstract::Group::ReturnType applyJacobianInverse(Teuchos::ParameterList& params,
                                const NOX::LAPACK::Vector& input,
                Vector& result) const;

      NOX::Abstract::Group::ReturnType applyJacobianInverse(Teuchos::ParameterList& params,
                                const NOX::Abstract::Vector& input,
                                NOX::Abstract::Vector& result) const;

      //! applyJacobianInverse for multiple right-hand sides
      virtual NOX::Abstract::Group::ReturnType
      applyJacobianInverseMultiVector(
                    Teuchos::ParameterList& params,
                    const NOX::Abstract::MultiVector& input,
                    NOX::Abstract::MultiVector& result) const;

      //@}

      /** @name "Is" functions
       *
       * Checks to see if various objects have been computed. Returns true
       * if the corresponding "compute" function has been called since the
       * last update to the solution vector (via instantiation or
       * computeX). */
      //@{

      bool isF() const;
      bool isJacobian() const;
      bool isGradient() const;
      bool isNewton() const;

      //@}

      /** @name "Get" functions
       *
       * Note that these function do not check whether or not the vectors
       * are valid. Must use the "Is" functions for that purpose. */
      //@{

      const NOX::Abstract::Vector& getX() const;

      const NOX::Abstract::Vector& getF() const;

      double getNormF() const;

      const NOX::Abstract::Vector& getGradient() const;

      const NOX::Abstract::Vector& getNewton() const;

      Teuchos::RCP< const NOX::Abstract::Vector > getXPtr() const;

      Teuchos::RCP< const NOX::Abstract::Vector > getFPtr() const;

      Teuchos::RCP< const NOX::Abstract::Vector > getGradientPtr() const;

      Teuchos::RCP< const NOX::Abstract::Vector > getNewtonPtr() const;

      //@}

      virtual Teuchos::RCP<NOX::Abstract::Group>
      clone(NOX::CopyType type = NOX::DeepCopy) const;

      //! Print out the group
      void print() const;

    protected:

      //! resets the isValid flags to false
      void resetIsValid();

    protected:

      /** @name Vectors */
      //@{
      //! Solution vector.
      NOX::LAPACK::Vector xVector;
      //! Right-hand-side vector (function evaluation).
      NOX::LAPACK::Vector fVector;
      //! Newton direction vector.
      NOX::LAPACK::Vector newtonVector;
      //! Gradient vector (steepest descent vector).
      NOX::LAPACK::Vector gradientVector;
      //@}


      //! Jacobian Matrix & LAPACK solver
      mutable NOX::LAPACK::LinearSolver<double> jacSolver;

      //! Problem interface
      NOX::LAPACK::Interface& problemInterface;

      /** @name IsValid flags
       *
       * True if the current solution is up-to-date with respect to the
       * currect xVector. */
      //@{
      bool isValidF;
      bool isValidJacobian;
      bool isValidGradient;
      bool isValidNewton;
      //@}

    };

  } // namespace LAPACK
} // namespace NOX


#endif