This file is indexed.

/usr/include/trilinos/Kokkos_Bitset.hpp is in libtrilinos-kokkos-dev 12.12.1-5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
/*
//@HEADER
// ************************************************************************
//
//                        Kokkos v. 2.0
//              Copyright (2014) Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact  H. Carter Edwards (hcedwar@sandia.gov)
//
// ************************************************************************
//@HEADER
*/

#ifndef KOKKOS_BITSET_HPP
#define KOKKOS_BITSET_HPP

#include <Kokkos_Core.hpp>
#include <Kokkos_Functional.hpp>

#include <impl/Kokkos_Bitset_impl.hpp>

#include <stdexcept>

namespace Kokkos {

template <typename Device = Kokkos::DefaultExecutionSpace >
class Bitset;

template <typename Device = Kokkos::DefaultExecutionSpace >
class ConstBitset;

template <typename DstDevice, typename SrcDevice>
void deep_copy( Bitset<DstDevice> & dst, Bitset<SrcDevice> const& src);

template <typename DstDevice, typename SrcDevice>
void deep_copy( Bitset<DstDevice> & dst, ConstBitset<SrcDevice> const& src);

template <typename DstDevice, typename SrcDevice>
void deep_copy( ConstBitset<DstDevice> & dst, ConstBitset<SrcDevice> const& src);


/// A thread safe view to a bitset
template <typename Device>
class Bitset
{
public:
  typedef Device execution_space;
  typedef unsigned size_type;

  enum { BIT_SCAN_REVERSE = 1u };
  enum { MOVE_HINT_BACKWARD = 2u };

  enum {
      BIT_SCAN_FORWARD_MOVE_HINT_FORWARD = 0u
    , BIT_SCAN_REVERSE_MOVE_HINT_FORWARD = BIT_SCAN_REVERSE
    , BIT_SCAN_FORWARD_MOVE_HINT_BACKWARD = MOVE_HINT_BACKWARD
    , BIT_SCAN_REVERSE_MOVE_HINT_BACKWARD = BIT_SCAN_REVERSE | MOVE_HINT_BACKWARD
  };

private:
  enum { block_size = static_cast<unsigned>(sizeof(unsigned)*CHAR_BIT) };
  enum { block_mask = block_size-1u };
  enum { block_shift = Kokkos::Impl::integral_power_of_two(block_size) };

public:


  /// constructor
  /// arg_size := number of bit in set
  Bitset(unsigned arg_size = 0u)
    : m_size(arg_size)
    , m_last_block_mask(0u)
    , m_blocks("Bitset", ((m_size + block_mask) >> block_shift) )
  {
    for (int i=0, end = static_cast<int>(m_size & block_mask); i < end; ++i) {
      m_last_block_mask |= 1u << i;
    }
  }

  /// assignment
  Bitset<Device> & operator = (Bitset<Device> const & rhs)
  {
    this->m_size = rhs.m_size;
    this->m_last_block_mask = rhs.m_last_block_mask;
    this->m_blocks = rhs.m_blocks;

    return *this;
  }

  /// copy constructor
  Bitset( Bitset<Device> const & rhs)
    : m_size( rhs.m_size )
    , m_last_block_mask( rhs.m_last_block_mask )
    , m_blocks( rhs.m_blocks )
  {}

  /// number of bits in the set
  /// can be call from the host or the device
  KOKKOS_FORCEINLINE_FUNCTION
  unsigned size() const
  { return m_size; }

  /// number of bits which are set to 1
  /// can only be called from the host
  unsigned count() const
  {
    Impl::BitsetCount< Bitset<Device> > f(*this);
    return f.apply();
  }

  /// set all bits to 1
  /// can only be called from the host
  void set()
  {
    Kokkos::deep_copy(m_blocks, ~0u );

    if (m_last_block_mask) {
      //clear the unused bits in the last block
      typedef Kokkos::Impl::DeepCopy< typename execution_space::memory_space, Kokkos::HostSpace > raw_deep_copy;
      raw_deep_copy( m_blocks.ptr_on_device() + (m_blocks.dimension_0() -1u), &m_last_block_mask, sizeof(unsigned));
    }
  }

  /// set all bits to 0
  /// can only be called from the host
  void reset()
  {
    Kokkos::deep_copy(m_blocks, 0u );
  }

  /// set all bits to 0
  /// can only be called from the host
  void clear()
  {
    Kokkos::deep_copy(m_blocks, 0u );
  }

  /// set i'th bit to 1
  /// can only be called from the device
  KOKKOS_FORCEINLINE_FUNCTION
  bool set( unsigned i ) const
  {
    if ( i < m_size ) {
      unsigned * block_ptr = &m_blocks[ i >> block_shift ];
      const unsigned mask = 1u << static_cast<int>( i & block_mask );

      return !( atomic_fetch_or( block_ptr, mask ) & mask );
    }
    return false;
  }

  /// set i'th bit to 0
  /// can only be called from the device
  KOKKOS_FORCEINLINE_FUNCTION
  bool reset( unsigned i ) const
  {
    if ( i < m_size ) {
      unsigned * block_ptr = &m_blocks[ i >> block_shift ];
      const unsigned mask = 1u << static_cast<int>( i & block_mask );

      return atomic_fetch_and( block_ptr, ~mask ) & mask;
    }
    return false;
  }

  /// return true if the i'th bit set to 1
  /// can only be called from the device
  KOKKOS_FORCEINLINE_FUNCTION
  bool test( unsigned i ) const
  {
    if ( i < m_size ) {
      const unsigned block = volatile_load(&m_blocks[ i >> block_shift ]);
      const unsigned mask = 1u << static_cast<int>( i & block_mask );
      return block & mask;
    }
    return false;
  }

  /// used with find_any_set_near or find_any_unset_near functions
  /// returns the max number of times those functions should be call
  /// when searching for an available bit
  KOKKOS_FORCEINLINE_FUNCTION
  unsigned max_hint() const
  {
    return m_blocks.dimension_0();
  }

  /// find a bit set to 1 near the hint
  /// returns a pair< bool, unsigned> where if result.first is true then result.second is the bit found
  /// and if result.first is false the result.second is a new hint
  KOKKOS_INLINE_FUNCTION
  Kokkos::pair<bool, unsigned> find_any_set_near( unsigned hint , unsigned scan_direction = BIT_SCAN_FORWARD_MOVE_HINT_FORWARD ) const
  {
    const unsigned block_idx = (hint >> block_shift) < m_blocks.dimension_0() ? (hint >> block_shift) : 0;
    const unsigned offset = hint & block_mask;
    unsigned block = volatile_load(&m_blocks[ block_idx ]);
    block = !m_last_block_mask || (block_idx < (m_blocks.dimension_0()-1)) ? block : block & m_last_block_mask ;

    return find_any_helper(block_idx, offset, block, scan_direction);
  }

  /// find a bit set to 0 near the hint
  /// returns a pair< bool, unsigned> where if result.first is true then result.second is the bit found
  /// and if result.first is false the result.second is a new hint
  KOKKOS_INLINE_FUNCTION
  Kokkos::pair<bool, unsigned> find_any_unset_near( unsigned hint , unsigned scan_direction = BIT_SCAN_FORWARD_MOVE_HINT_FORWARD ) const
  {
    const unsigned block_idx = hint >> block_shift;
    const unsigned offset = hint & block_mask;
    unsigned block = volatile_load(&m_blocks[ block_idx ]);
    block = !m_last_block_mask || (block_idx < (m_blocks.dimension_0()-1) ) ? ~block : ~block & m_last_block_mask ;

    return find_any_helper(block_idx, offset, block, scan_direction);
  }

private:

  KOKKOS_FORCEINLINE_FUNCTION
  Kokkos::pair<bool, unsigned> find_any_helper(unsigned block_idx, unsigned offset, unsigned block, unsigned scan_direction) const
  {
    Kokkos::pair<bool, unsigned> result( block > 0u, 0);

    if (!result.first) {
      result.second = update_hint( block_idx, offset, scan_direction );
    }
    else {
      result.second = scan_block(  (block_idx << block_shift)
                                 , offset
                                 , block
                                 , scan_direction
                                );
    }
    return result;
  }


  KOKKOS_FORCEINLINE_FUNCTION
  unsigned scan_block(unsigned block_start, int offset, unsigned block, unsigned scan_direction ) const
  {
    offset = !(scan_direction & BIT_SCAN_REVERSE) ? offset : (offset + block_mask) & block_mask;
    block = Impl::rotate_right(block, offset);
    return ((( !(scan_direction & BIT_SCAN_REVERSE) ?
               Impl::bit_scan_forward(block) :
               Impl::bit_scan_reverse(block)
             ) + offset
            ) & block_mask
           ) + block_start;
  }

  KOKKOS_FORCEINLINE_FUNCTION
  unsigned update_hint( long long block_idx, unsigned offset, unsigned scan_direction ) const
  {
    block_idx += scan_direction & MOVE_HINT_BACKWARD ? -1 : 1;
    block_idx = block_idx >= 0 ? block_idx : m_blocks.dimension_0() - 1;
    block_idx = block_idx < static_cast<long long>(m_blocks.dimension_0()) ? block_idx : 0;

    return static_cast<unsigned>(block_idx)*block_size + offset;
  }

private:

  unsigned m_size;
  unsigned m_last_block_mask;
  View< unsigned *, execution_space, MemoryTraits<RandomAccess> > m_blocks;

private:
  template <typename DDevice>
  friend class Bitset;

  template <typename DDevice>
  friend class ConstBitset;

  template <typename Bitset>
  friend struct Impl::BitsetCount;

  template <typename DstDevice, typename SrcDevice>
  friend void deep_copy( Bitset<DstDevice> & dst, Bitset<SrcDevice> const& src);

  template <typename DstDevice, typename SrcDevice>
  friend void deep_copy( Bitset<DstDevice> & dst, ConstBitset<SrcDevice> const& src);
};

/// a thread-safe view to a const bitset
/// i.e. can only test bits
template <typename Device>
class ConstBitset
{
public:
  typedef Device execution_space;
  typedef unsigned size_type;

private:
  enum { block_size = static_cast<unsigned>(sizeof(unsigned)*CHAR_BIT) };
  enum { block_mask = block_size -1u };
  enum { block_shift = Kokkos::Impl::integral_power_of_two(block_size) };

public:
  ConstBitset()
    : m_size (0)
  {}

  ConstBitset(Bitset<Device> const& rhs)
    : m_size(rhs.m_size)
    , m_blocks(rhs.m_blocks)
  {}

  ConstBitset(ConstBitset<Device> const& rhs)
    : m_size( rhs.m_size )
    , m_blocks( rhs.m_blocks )
  {}

  ConstBitset<Device> & operator = (Bitset<Device> const & rhs)
  {
    this->m_size = rhs.m_size;
    this->m_blocks = rhs.m_blocks;

    return *this;
  }

  ConstBitset<Device> & operator = (ConstBitset<Device> const & rhs)
  {
    this->m_size = rhs.m_size;
    this->m_blocks = rhs.m_blocks;

    return *this;
  }


  KOKKOS_FORCEINLINE_FUNCTION
  unsigned size() const
  {
    return m_size;
  }

  unsigned count() const
  {
    Impl::BitsetCount< ConstBitset<Device> > f(*this);
    return f.apply();
  }

  KOKKOS_FORCEINLINE_FUNCTION
  bool test( unsigned i ) const
  {
    if ( i < m_size ) {
      const unsigned block = m_blocks[ i >> block_shift ];
      const unsigned mask = 1u << static_cast<int>( i & block_mask );
      return block & mask;
    }
    return false;
  }

private:

  unsigned m_size;
  View< const unsigned *, execution_space, MemoryTraits<RandomAccess> > m_blocks;

private:
  template <typename DDevice>
  friend class ConstBitset;

  template <typename Bitset>
  friend struct Impl::BitsetCount;

  template <typename DstDevice, typename SrcDevice>
  friend void deep_copy( Bitset<DstDevice> & dst, ConstBitset<SrcDevice> const& src);

  template <typename DstDevice, typename SrcDevice>
  friend void deep_copy( ConstBitset<DstDevice> & dst, ConstBitset<SrcDevice> const& src);
};


template <typename DstDevice, typename SrcDevice>
void deep_copy( Bitset<DstDevice> & dst, Bitset<SrcDevice> const& src)
{
  if (dst.size() != src.size()) {
    throw std::runtime_error("Error: Cannot deep_copy bitsets of different sizes!");
  }

  typedef Kokkos::Impl::DeepCopy< typename DstDevice::memory_space, typename SrcDevice::memory_space > raw_deep_copy;
  raw_deep_copy(dst.m_blocks.ptr_on_device(), src.m_blocks.ptr_on_device(), sizeof(unsigned)*src.m_blocks.dimension_0());
}

template <typename DstDevice, typename SrcDevice>
void deep_copy( Bitset<DstDevice> & dst, ConstBitset<SrcDevice> const& src)
{
  if (dst.size() != src.size()) {
    throw std::runtime_error("Error: Cannot deep_copy bitsets of different sizes!");
  }

  typedef Kokkos::Impl::DeepCopy< typename DstDevice::memory_space, typename SrcDevice::memory_space > raw_deep_copy;
  raw_deep_copy(dst.m_blocks.ptr_on_device(), src.m_blocks.ptr_on_device(), sizeof(unsigned)*src.m_blocks.dimension_0());
}

template <typename DstDevice, typename SrcDevice>
void deep_copy( ConstBitset<DstDevice> & dst, ConstBitset<SrcDevice> const& src)
{
  if (dst.size() != src.size()) {
    throw std::runtime_error("Error: Cannot deep_copy bitsets of different sizes!");
  }

  typedef Kokkos::Impl::DeepCopy< typename DstDevice::memory_space, typename SrcDevice::memory_space > raw_deep_copy;
  raw_deep_copy(dst.m_blocks.ptr_on_device(), src.m_blocks.ptr_on_device(), sizeof(unsigned)*src.m_blocks.dimension_0());
}

} // namespace Kokkos

#endif //KOKKOS_BITSET_HPP