/usr/include/trilinos/AnasaziTraceMinDavidson.hpp is in libtrilinos-anasazi-dev 12.12.1-5.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 | // @HEADER
// ***********************************************************************
//
// Anasazi: Block Eigensolvers Package
// Copyright 2004 Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ***********************************************************************
// @HEADER
/*! \file AnasaziTraceMinDavidson.hpp
\brief Implementation of the TraceMin-Davidson method
*/
#ifndef ANASAZI_TRACEMIN_DAVIDSON_HPP
#define ANASAZI_TRACEMIN_DAVIDSON_HPP
#include "AnasaziConfigDefs.hpp"
#include "AnasaziEigensolver.hpp"
#include "AnasaziMultiVecTraits.hpp"
#include "AnasaziMatOrthoManager.hpp"
#include "AnasaziOperatorTraits.hpp"
#include "AnasaziTraceMinBase.hpp"
#include "Teuchos_ScalarTraits.hpp"
#include "Teuchos_SerialDenseMatrix.hpp"
#include "Teuchos_ParameterList.hpp"
#include "Teuchos_TimeMonitor.hpp"
namespace Anasazi {
namespace Experimental {
/*! \class TraceMinDavidson
\brief This class implements a TraceMin-Davidson iteration for solving
symmetric generalized eigenvalue problems
This method is described in <em>The trace minimization method for the
symmetric generalized eigenvalue problem</em>, A. Sameh and Z. Tong,
Journal of Computational and Applied Mathematics, 123, pp 155-175 (2000)
\ingroup anasazi_solver_framework
\author Alicia Klinvex
*/
template <class ScalarType, class MV, class OP>
class TraceMinDavidson : public TraceMinBase<ScalarType,MV,OP> {
public:
/*! \brief %TraceMinBase constructor with eigenproblem, solver utilities, and parameter list of solver options.
*
* This constructor takes pointers required by the eigensolver, in addition
* to a parameter list of options for the eigensolver. These options include the following (in addition to those
* of TraceMinBase):
* - "Block Size" - an \c int specifying the block size used by the algorithm. This can also be specified using the setBlockSize() method.
* - "Num Blocks" - an \c int specifying the maximum number of blocks allocated for the solver basis.
*/
TraceMinDavidson( const Teuchos::RCP<Eigenproblem<ScalarType,MV,OP> > &problem,
const Teuchos::RCP<SortManager<typename Teuchos::ScalarTraits<ScalarType>::magnitudeType> > &sorter,
const Teuchos::RCP<OutputManager<ScalarType> > &printer,
const Teuchos::RCP<StatusTest<ScalarType,MV,OP> > &tester,
const Teuchos::RCP<MatOrthoManager<ScalarType,MV,OP> > &ortho,
Teuchos::ParameterList ¶ms
);
private:
//
// Convenience typedefs
//
typedef MultiVecTraits<ScalarType,MV> MVT;
typedef OperatorTraits<ScalarType,MV,OP> OPT;
typedef Teuchos::ScalarTraits<ScalarType> SCT;
typedef typename SCT::magnitudeType MagnitudeType;
// TraceMin specific methods
void addToBasis(const Teuchos::RCP<const MV> Delta);
void harmonicAddToBasis(const Teuchos::RCP<const MV> Delta);
};
//////////////////////////////////////////////////////////////////////////////////////////////////
//////////////////////////////////////////////////////////////////////////////////////////////////
//
// Implementations
//
//////////////////////////////////////////////////////////////////////////////////////////////////
//////////////////////////////////////////////////////////////////////////////////////////////////
//////////////////////////////////////////////////////////////////////////////////////////////////
// Constructor
template <class ScalarType, class MV, class OP>
TraceMinDavidson<ScalarType,MV,OP>::TraceMinDavidson(
const Teuchos::RCP<Eigenproblem<ScalarType,MV,OP> > &problem,
const Teuchos::RCP<SortManager<typename Teuchos::ScalarTraits<ScalarType>::magnitudeType> > &sorter,
const Teuchos::RCP<OutputManager<ScalarType> > &printer,
const Teuchos::RCP<StatusTest<ScalarType,MV,OP> > &tester,
const Teuchos::RCP<MatOrthoManager<ScalarType,MV,OP> > &ortho,
Teuchos::ParameterList ¶ms
) :
TraceMinBase<ScalarType,MV,OP>(problem,sorter,printer,tester,ortho,params)
{
}
//////////////////////////////////////////////////////////////////////////////////////////////////
// 1. Project Delta so that V' M Delta = 0 and Q' M Delta = 0
// 2. Normalize Delta so that Delta' M Delta = I
// 3. Add Delta to the end of V: V = [V Delta]
// 4. Update KV and MV
template <class ScalarType, class MV, class OP>
void TraceMinDavidson<ScalarType,MV,OP>::addToBasis(Teuchos::RCP<const MV> Delta)
{
// TODO: We should also test the row length and map, etc...
TEUCHOS_TEST_FOR_EXCEPTION(MVT::GetNumberVecs(*Delta) != this->blockSize_, std::invalid_argument,
"Anasazi::TraceMinDavidson::addToBasis(): Delta does not have blockSize_ columns");
int rank;
// Vector of indices
std::vector<int> curind(this->curDim_), newind(this->blockSize_);
// Pointer to the meaningful parts of V, KV, and MV
Teuchos::RCP<MV> lclV, lclKV, lclMV;
// Holds the vectors we project against
Teuchos::Array< Teuchos::RCP<const MV> > projVecs = this->auxVecs_;
// Get the existing parts of the basis and add them to the list of things we project against
for(int i=0; i<this->curDim_; i++)
curind[i] = i;
lclV = MVT::CloneViewNonConst(*this->V_,curind);
projVecs.push_back(lclV);
// Get the new part of the basis (where we're going to insert Delta)
for (int i=0; i<this->blockSize_; ++i)
newind[i] = this->curDim_ + i;
lclV = MVT::CloneViewNonConst(*this->V_,newind);
// Insert Delta at the end of V
MVT::SetBlock(*Delta,newind,*this->V_);
this->curDim_ += this->blockSize_;
// Project out the components of Delta in the direction of V
if(this->hasM_)
{
// It is more efficient to provide the orthomanager with MV
Teuchos::Array< Teuchos::RCP<const MV> > MprojVecs = this->MauxVecs_;
lclMV = MVT::CloneViewNonConst(*this->MV_,curind);
MprojVecs.push_back(lclMV);
// Compute M*Delta
lclMV = MVT::CloneViewNonConst(*this->MV_,newind);
{
#ifdef ANASAZI_TEUCHOS_TIME_MONITOR
Teuchos::TimeMonitor lcltimer( *this->timerMOp_ );
#endif
this->count_ApplyM_+= this->blockSize_;
OPT::Apply(*this->MOp_,*lclV,*lclMV);
}
{
#ifdef ANASAZI_TEUCHOS_TIME_MONITOR
Teuchos::TimeMonitor lcltimer( *this->timerOrtho_ );
#endif
// Project and normalize Delta
rank = this->orthman_->projectAndNormalizeMat(*lclV,projVecs,
Teuchos::tuple(Teuchos::RCP< Teuchos::SerialDenseMatrix< int, ScalarType > >(Teuchos::null)),
Teuchos::null,lclMV,MprojVecs);
}
MprojVecs.pop_back();
}
else
{
#ifdef ANASAZI_TEUCHOS_TIME_MONITOR
Teuchos::TimeMonitor lcltimer( *this->timerOrtho_ );
#endif
// Project and normalize Delta
rank = this->orthman_->projectAndNormalizeMat(*lclV,projVecs);
}
projVecs.pop_back();
TEUCHOS_TEST_FOR_EXCEPTION(rank != this->blockSize_,TraceMinBaseOrthoFailure,
"Anasazi::TraceMinDavidson::addToBasis(): Couldn't generate basis of full rank.");
// Update KV
if(this->Op_ != Teuchos::null)
{
#ifdef ANASAZI_TEUCHOS_TIME_MONITOR
Teuchos::TimeMonitor lcltimer( *this->timerOp_ );
#endif
this->count_ApplyOp_+= this->blockSize_;
lclKV = MVT::CloneViewNonConst(*this->KV_,newind);
OPT::Apply(*this->Op_,*lclV,*lclKV);
}
}
//////////////////////////////////////////////////////////////////////////////////////////////////
// 1. Project Delta so that V' M Delta = 0 and Q' M Delta = 0
// 2. Normalize Delta so that Delta' M Delta = I
// 3. Add Delta to the end of V: V = [V Delta]
// 4. Update KV and MV
template <class ScalarType, class MV, class OP>
void TraceMinDavidson<ScalarType,MV,OP>::harmonicAddToBasis(Teuchos::RCP<const MV> Delta)
{
// TODO: We should also test the row length and map, etc...
TEUCHOS_TEST_FOR_EXCEPTION(MVT::GetNumberVecs(*Delta) != this->blockSize_, std::invalid_argument,
"Anasazi::TraceMinDavidson::addToBasis(): Delta does not have blockSize_ columns");
int rank;
// Vector of indices
std::vector<int> curind(this->curDim_), newind(this->blockSize_);
// Pointer to the meaningful parts of V, KV, and MV
Teuchos::RCP<MV> lclV, lclKV, lclMV, projVecs, KprojVecs;
// Array of things we project against
// Get the existing parts of the basis and add them to the list of things we project against
for(int i=0; i<this->curDim_; i++)
curind[i] = i;
projVecs = MVT::CloneViewNonConst(*this->V_,curind);
if(this->Op_ != Teuchos::null)
{
lclKV = MVT::CloneViewNonConst(*this->KV_,curind);
KprojVecs = lclKV;
}
// Get the new part of the basis (where we're going to insert Delta)
for (int i=0; i<this->blockSize_; ++i)
newind[i] = this->curDim_ + i;
lclV = MVT::CloneViewNonConst(*this->V_,newind);
// Insert Delta at the end of V
MVT::SetBlock(*Delta,newind,*this->V_);
this->curDim_ += this->blockSize_;
// Project the auxVecs out of Delta
if(this->auxVecs_.size() > 0)
this->orthman_->projectMat(*lclV,this->auxVecs_);
// Update KV
if(this->Op_ != Teuchos::null)
{
#ifdef ANASAZI_TEUCHOS_TIME_MONITOR
Teuchos::TimeMonitor lcltimer( *this->timerOp_ );
#endif
this->count_ApplyOp_+= this->blockSize_;
lclKV = MVT::CloneViewNonConst(*this->KV_,newind);
OPT::Apply(*this->Op_,*lclV,*lclKV);
}
// Project out the components of Delta in the direction of V
// gamma = KauxVecs' lclKV
int nauxVecs = MVT::GetNumberVecs(*projVecs);
RCP< Teuchos::SerialDenseMatrix<int,ScalarType> > gamma = rcp(new Teuchos::SerialDenseMatrix<int,ScalarType>(nauxVecs,this->blockSize_));
this->orthman_->innerProdMat(*KprojVecs,*lclKV,*gamma);
// lclKV = lclKV - KauxVecs gamma
MVT::MvTimesMatAddMv(-this->ONE,*KprojVecs,*gamma,this->ONE,*lclKV);
// lclV = lclV - auxVecs gamma
MVT::MvTimesMatAddMv(-this->ONE,*projVecs,*gamma,this->ONE,*lclV);
// Normalize lclKV
RCP< Teuchos::SerialDenseMatrix<int,ScalarType> > gamma2 = rcp(new Teuchos::SerialDenseMatrix<int,ScalarType>(this->blockSize_,this->blockSize_));
rank = this->orthman_->normalizeMat(*lclKV,gamma2);
// lclV = lclV/gamma
Teuchos::SerialDenseSolver<int,ScalarType> SDsolver;
SDsolver.setMatrix(gamma2);
SDsolver.invert();
RCP<MV> tempMV = MVT::CloneCopy(*lclV);
MVT::MvTimesMatAddMv(this->ONE,*tempMV,*gamma2,this->ZERO,*lclV);
TEUCHOS_TEST_FOR_EXCEPTION(rank != this->blockSize_,TraceMinBaseOrthoFailure,
"Anasazi::TraceMinDavidson::addToBasis(): Couldn't generate basis of full rank.");
// Update MV
if(this->hasM_)
{
#ifdef ANASAZI_TEUCHOS_TIME_MONITOR
Teuchos::TimeMonitor lcltimer( *this->timerMOp_ );
#endif
this->count_ApplyM_+= this->blockSize_;
lclMV = MVT::CloneViewNonConst(*this->MV_,newind);
OPT::Apply(*this->MOp_,*lclV,*lclMV);
}
}
}} // End of namespace Anasazi
#endif
// End of file AnasaziTraceMinDavidson.hpp
|