This file is indexed.

/usr/include/trilinos/AnasaziStubTsqrAdapter.hpp is in libtrilinos-anasazi-dev 12.12.1-5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
// @HEADER
// ***********************************************************************
//
//                 Anasazi: Block Eigensolvers Package
//                 Copyright 2004 Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ***********************************************************************
// @HEADER

#ifndef __Anasazi_StubTsqrAdapter_hpp
#define __Anasazi_StubTsqrAdapter_hpp

#include <AnasaziConfigDefs.hpp>
#include <Teuchos_ParameterListAcceptorDefaultBase.hpp>
#include <Teuchos_ScalarTraits.hpp>
#include <Teuchos_SerialDenseMatrix.hpp>
#include <Teuchos_TypeNameTraits.hpp>
#include <stdexcept>

/// \file AnasaziStubTsqrAdapter.hpp
/// \brief "Stub" TSQR adapter for unsupported multivector types.

namespace Anasazi {
namespace details {

  /// \class StubTsqrAdapter
  /// \brief "Stub" TSQR adaptor for unsupported multivector types.
  ///
  /// TSQR (Tall Skinny QR factorization) is an orthogonalization
  /// kernel that is as accurate as Householder QR, yet requires only
  /// \f$2 \log P\f$ messages between $P$ MPI processes, independently
  /// of the number of columns in the multivector.  
  ///
  /// TSQR works independently of the particular multivector
  /// implementation, and interfaces to the latter via an adapter
  /// class.  Each multivector type MV needs its own adapter class.
  /// The specialization of MultiVecTraits for MV refers to its
  /// corresponding adapter class as its \c tsqr_adaptor_type [sic;
  /// sorry about the lack of standard spelling of "adapter"] typedef.
  /// For examples, please refer to the Epetra_MultiVector and
  /// Tpetra::MultiVector specializations of Anasazi::MultiVecTraits.
  ///
  /// Nevertheless, there may be multivector types for which a TSQR
  /// adapter has not yet been written.  This "stub" adapter
  /// implements the interface that TSQR adapters must implement, but
  /// all of its methods throw std::logic_error to indicate that this
  /// is a stub.  Thus, it allows Anasazi classes like
  /// TsqrOrthoManagerImpl to compile successfully for unsupported MV
  /// types.  This in turn allows OrthoManagerFactory to be templated
  /// on the MV type.
  template<class MultiVectorType>
  class StubTsqrAdapter : public Teuchos::ParameterListAcceptorDefaultBase {
  public:
    typedef MultiVectorType MV;
    typedef double scalar_type; // This doesn't really matter
    typedef int ordinal_type; // This doesn't matter either
    typedef int node_type; // Nor does this
    typedef Teuchos::SerialDenseMatrix<ordinal_type, scalar_type> dense_matrix_type;
    typedef typename Teuchos::ScalarTraits<scalar_type>::magnitudeType magnitude_type;

    /// \brief Constructor (that accepts a parameter list).
    ///
    /// \param plist [in] List of parameters for configuring TSQR.
    ///   The specific parameter keys that are read depend on the TSQR
    ///   implementation.  For details, call \c getValidParameters()
    ///   and examine the documentation embedded therein.
    StubTsqrAdapter (const Teuchos::RCP<Teuchos::ParameterList>& plist) 
    {
      TEUCHOS_TEST_FOR_EXCEPTION(true, std::logic_error, "TSQR adapter for "
        "multivector type \"" << Teuchos::TypeNameTraits<MV>::name() 
        << " is not yet implemented.");
    }

    //! Default constructor (stub; throws std::logic_error).
    StubTsqrAdapter ()
    {
      TEUCHOS_TEST_FOR_EXCEPTION(true, std::logic_error, "TSQR adapter for "
        "multivector type \"" << Teuchos::TypeNameTraits<MV>::name() 
        << " is not yet implemented.");
    }

    //! Copy constructor (throws std::logic_error).
    StubTsqrAdapter (const StubTsqrAdapter& rhs)
    {
      (void) rhs;
      TEUCHOS_TEST_FOR_EXCEPTION(true, std::logic_error, "TSQR adapter for "
        "multivector type \"" << Teuchos::TypeNameTraits<MV>::name() 
        << " is not yet implemented.");
    }

    //! Get list of valid default parameters (stub; throws std::logic_error).
    Teuchos::RCP<const Teuchos::ParameterList>
    getValidParameters () const
    {
      TEUCHOS_TEST_FOR_EXCEPTION(true, std::logic_error, "TSQR adapter for "
        "multivector type \"" << Teuchos::TypeNameTraits<MV>::name() 
        << " is not yet implemented.");
    }

    //! Set parameters (stub; throws std::logic_error).
    void 
    setParameterList (const Teuchos::RCP<Teuchos::ParameterList>& plist)
    {
      TEUCHOS_TEST_FOR_EXCEPTION(true, std::logic_error, "TSQR adapter for "
        "multivector type \"" << Teuchos::TypeNameTraits<MV>::name() 
        << " is not yet implemented.");
    }

    //! Compute QR factorization [Q,R] = qr(A,0) (stub; throws std::logic_error).
    void
    factorExplicit (MV& A,
		    MV& Q,
		    dense_matrix_type& R,
		    const bool forceNonnegativeDiagonal=false)
    {
      TEUCHOS_TEST_FOR_EXCEPTION(true, std::logic_error, "TSQR adapter for "
        "multivector type \"" << Teuchos::TypeNameTraits<MV>::name() 
        << " is not yet implemented.");
    }

    //! Rank-revealing decomposition (stub; does nothing).
    int
    revealRank (MV& Q,
		dense_matrix_type& R,
		const magnitude_type& tol)
    {
      // mfh 08 Sep 2012: In order to prevent compiler warnings on
      // some platforms, we simply return some value.  This code can
      // never execute anyway, since it is in an instance method and
      // all of the constructors throw exceptions.  (We've overridden
      // the default and copy constructors to throw exceptions.)
      return 0; 
    }
  };

} // namespace details
} // namespace Anasazi

#endif // __Anasazi_StubTsqrAdapter_hpp