/usr/include/trilinos/AnasaziSaddleOperator.hpp is in libtrilinos-anasazi-dev 12.12.1-5.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 | // @HEADER
// ***********************************************************************
//
// Anasazi: Block Eigensolvers Package
// Copyright 2004 Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ***********************************************************************
// @HEADER
/*! \file AnasaziSaddleOperator.hpp
* \brief An operator of the form [A Y; Y' 0] where A is a sparse matrix and Y a multivector.
*
* Used by TraceMin to solve the saddle point problem.
*/
#ifndef ANASAZI_SADDLE_OPERATOR_HPP
#define ANASAZI_SADDLE_OPERATOR_HPP
#include "AnasaziConfigDefs.hpp"
#include "AnasaziSaddleContainer.hpp"
#include "AnasaziTraceMinRitzOp.hpp"
#include "Teuchos_SerialDenseSolver.hpp"
using Teuchos::RCP;
enum PrecType {NO_PREC, NONSYM, BD_PREC, HSS_PREC};
namespace Anasazi {
namespace Experimental {
template <class ScalarType, class MV, class OP>
class SaddleOperator : public TraceMinOp<ScalarType,SaddleContainer<ScalarType,MV>,OP>
{
typedef Anasazi::MultiVecTraits<ScalarType,MV> MVT;
typedef Teuchos::SerialDenseMatrix<int,ScalarType> SerialDenseMatrix;
public:
// Default constructor
SaddleOperator( ) { };
SaddleOperator( const Teuchos::RCP<OP> A, const Teuchos::RCP<const MV> B, PrecType pt=NO_PREC, const ScalarType alpha=1. );
// Applies the saddle point operator to a "multivector"
void Apply(const SaddleContainer<ScalarType,MV>& X, SaddleContainer<ScalarType,MV>& Y) const;
void removeIndices(const std::vector<int>& indicesToRemove) { A_->removeIndices(indicesToRemove); };
private:
// A is the 1-1 block, and B the 1-2 block
Teuchos::RCP<OP> A_;
Teuchos::RCP<const MV> B_;
Teuchos::RCP<SerialDenseMatrix> Schur_;
PrecType pt_;
ScalarType alpha_;
};
// Default constructor
template <class ScalarType, class MV, class OP>
SaddleOperator<ScalarType, MV, OP>::SaddleOperator( const Teuchos::RCP<OP> A, const Teuchos::RCP<const MV> B, PrecType pt, const ScalarType alpha )
{
// Get a pointer to A and B
A_ = A;
B_ = B;
pt_ = pt;
alpha_ = alpha;
if(pt == BD_PREC)
{
// Form the Schur complement
int nvecs = MVT::GetNumberVecs(*B);
Teuchos::RCP<MV> AinvB = MVT::Clone(*B,nvecs);
Schur_ = rcp(new SerialDenseMatrix(nvecs,nvecs));
A_->Apply(*B_,*AinvB);
MVT::MvTransMv(1., *B_, *AinvB, *Schur_);
}
}
// Applies the saddle point operator to a "multivector"
template <class ScalarType, class MV, class OP>
void SaddleOperator<ScalarType, MV, OP>::Apply(const SaddleContainer<ScalarType,MV>& X, SaddleContainer<ScalarType,MV>& Y) const
{
RCP<SerialDenseMatrix> Xlower = X.getLower();
RCP<SerialDenseMatrix> Ylower = Y.getLower();
if(pt_ == NO_PREC)
{
// trans does literally nothing, because the operator is symmetric
// Y.bottom = B'X.top
MVT::MvTransMv(1., *B_, *(X.upper_), *Ylower);
// Y.top = A*X.top+B*X.bottom
A_->Apply(*(X.upper_), *(Y.upper_));
MVT::MvTimesMatAddMv(1., *B_, *Xlower, 1., *(Y.upper_));
}
else if(pt_ == NONSYM)
{
// Y.bottom = -B'X.top
MVT::MvTransMv(-1., *B_, *(X.upper_), *Ylower);
// Y.top = A*X.top+B*X.bottom
A_->Apply(*(X.upper_), *(Y.upper_));
MVT::MvTimesMatAddMv(1., *B_, *Xlower, 1., *(Y.upper_));
}
else if(pt_ == BD_PREC)
{
Teuchos::SerialDenseSolver<int,ScalarType> MySolver;
// Solve A Y.X = X.X
A_->Apply(*(X.upper_),*(Y.upper_));
// So, let me tell you a funny story about how the SerialDenseSolver destroys the original matrix...
Teuchos::RCP<SerialDenseMatrix> localSchur = Teuchos::rcp(new SerialDenseMatrix(*Schur_));
// Solve the small system
MySolver.setMatrix(localSchur);
MySolver.setVectors(Ylower, Xlower);
MySolver.solve();
}
// Hermitian-Skew Hermitian splitting has some extra requirements
// We need B'B = I, which is true for standard eigenvalue problems, but not generalized
// We also need to use gmres, because our operator is no longer symmetric
else if(pt_ == HSS_PREC)
{
// std::cout << "applying preconditioner to";
// X.MvPrint(std::cout);
// Solve (H + alpha I) Y1 = X
// 1. Apply preconditioner
A_->Apply(*(X.upper_),*(Y.upper_));
// 2. Scale by 1/alpha
*Ylower = *Xlower;
Ylower->scale(1./alpha_);
// std::cout << "H preconditioning produced";
// Y.setLower(Ylower);
// Y.MvPrint(std::cout);
// Solve (S + alpha I) Y = Y1
// 1. Y_lower = (B' Y1_upper + alpha Y1_lower) / (1 + alpha^2)
Teuchos::RCP<SerialDenseMatrix> Y1_lower = Teuchos::rcp(new SerialDenseMatrix(*Ylower));
MVT::MvTransMv(1,*B_,*(Y.upper_),*Ylower);
// std::cout << "Y'b1 " << *Ylower;
Y1_lower->scale(alpha_);
// std::cout << "alpha b2 " << *Y1_lower;
*Ylower += *Y1_lower;
// std::cout << "alpha b2 + Y'b1 " << *Ylower;
Ylower->scale(1/(1+alpha_*alpha_));
// 2. Y_upper = (Y1_upper - B Y_lower) / alpha
MVT::MvTimesMatAddMv(-1/alpha_,*B_,*Ylower,1/alpha_,*(Y.upper_));
// std::cout << "preconditioning produced";
// Y.setLower(Ylower);
// Y.MvPrint(std::cout);
}
else
{
std::cout << "Not a valid preconditioner type\n";
}
Y.setLower(Ylower);
// std::cout << "result of applying operator";
// Y.MvPrint(std::cout);
}
} // End namespace Experimental
template<class ScalarType, class MV, class OP>
class OperatorTraits<ScalarType, Experimental::SaddleContainer<ScalarType,MV>, Experimental::SaddleOperator<ScalarType,MV,OP> >
{
public:
static void Apply( const Experimental::SaddleOperator<ScalarType,MV,OP>& Op,
const Experimental::SaddleContainer<ScalarType,MV>& x,
Experimental::SaddleContainer<ScalarType,MV>& y)
{ Op.Apply( x, y); };
};
} // end namespace Anasazi
#ifdef HAVE_ANASAZI_BELOS
namespace Belos {
template<class ScalarType, class MV, class OP>
class OperatorTraits<ScalarType, Anasazi::Experimental::SaddleContainer<ScalarType,MV>, Anasazi::Experimental::SaddleOperator<ScalarType,MV,OP> >
{
public:
static void Apply( const Anasazi::Experimental::SaddleOperator<ScalarType,MV,OP>& Op,
const Anasazi::Experimental::SaddleContainer<ScalarType,MV>& x,
Anasazi::Experimental::SaddleContainer<ScalarType,MV>& y)
{ Op.Apply( x, y); };
};
} // end namespace Belos
#endif
#endif
|