This file is indexed.

/usr/include/trilinos/AnasaziRTRSolMgr.hpp is in libtrilinos-anasazi-dev 12.12.1-5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
// @HEADER
// ***********************************************************************
//
//                 Anasazi: Block Eigensolvers Package
//                 Copyright 2004 Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ***********************************************************************
// @HEADER

#ifndef ANASAZI_RTR_SOLMGR_HPP
#define ANASAZI_RTR_SOLMGR_HPP

/*! \file AnasaziRTRSolMgr.hpp
  \brief The Anasazi::RTRSolMgr provides a simple solver manager over the IRTR
  eigensolvers.
*/

#include "AnasaziConfigDefs.hpp"
#include "AnasaziTypes.hpp"

#include "AnasaziEigenproblem.hpp"
#include "AnasaziSolverManager.hpp"
#include "AnasaziSolverUtils.hpp"

#include "AnasaziIRTR.hpp"
#include "AnasaziSIRTR.hpp"
#include "AnasaziBasicSort.hpp"
#include "AnasaziICGSOrthoManager.hpp"
#include "AnasaziStatusTestMaxIters.hpp"
#include "AnasaziStatusTestResNorm.hpp"
#include "AnasaziStatusTestWithOrdering.hpp"
#include "AnasaziStatusTestCombo.hpp"
#include "AnasaziStatusTestOutput.hpp"
#include "AnasaziBasicOutputManager.hpp"

#include <Teuchos_TimeMonitor.hpp>
#include <Teuchos_FancyOStream.hpp>

/*! \class Anasazi::RTRSolMgr
  \brief The Anasazi::RTRSolMgr provides a simple solver
  manager over the RTR eigensolver. For more information, see the discussion for RTRBase.

  \ingroup anasazi_solver_framework

  \author Chris Baker
*/

namespace Anasazi {

template<class ScalarType, class MV, class OP>
class RTRSolMgr : public SolverManager<ScalarType,MV,OP> {

  private:
    typedef MultiVecTraits<ScalarType,MV> MVT;
    typedef OperatorTraits<ScalarType,MV,OP> OPT;
    typedef Teuchos::ScalarTraits<ScalarType> SCT;
    typedef typename Teuchos::ScalarTraits<ScalarType>::magnitudeType MagnitudeType;
    typedef Teuchos::ScalarTraits<MagnitudeType> MT;

  public:

  //! @name Constructors/Destructor
  //@{

  /*! \brief Basic constructor for RTRSolMgr.
   *
   * This constructor accepts the Eigenproblem to be solved in addition
   * to a parameter list of options for the solver manager. These options include the following:
   *   - Solver parameters
   *      - \c "Skinny Solver" - a \c bool specifying whether a non-caching ("skinny") solver implementation is used. Determines whether the underlying solver is IRTR or SIRTR.
   *      - \c "Which" - a \c string specifying the desired eigenvalues: SR or LR, i.e., smallest or largest algebraic eigenvalues.
   *      - \c "Block Size" - a \c int specifying the block size to be used by the underlying RTR solver. Default: problem->getNEV()
   *      - \c "Verbosity" - a sum of MsgType specifying the verbosity. Default: ::Errors
   *   - Convergence parameters
   *      - \c "Maximum Iterations" - a \c int specifying the maximum number of iterations the underlying solver is allowed to perform. Default: 100
   *      - \c "Convergence Tolerance" - a \c MagnitudeType specifying the level that residual norms must reach to decide convergence. Default: machine precision.
   *      - \c "Relative Convergence Tolerance" - a \c bool specifying whether residuals norms should be scaled by their eigenvalues for the purposing of deciding convergence. Default: true
   *      - \c "Convergence Norm" - a \c string specifying the norm for convergence testing: "2" or "M"
   */
  RTRSolMgr( const Teuchos::RCP<Eigenproblem<ScalarType,MV,OP> > &problem,
             Teuchos::ParameterList &pl );

  //! Destructor.
  virtual ~RTRSolMgr() {};
  //@}

  //! @name Accessor methods
  //@{

  //! Return the eigenvalue problem.
  const Eigenproblem<ScalarType,MV,OP>& getProblem() const {
    return *problem_;
  }

  /*! \brief Return the timers for this object.
   *
   * The timers are ordered as follows:
   *   - time spent in solve() routine
   */
   Teuchos::Array<Teuchos::RCP<Teuchos::Time> > getTimers() const {
     return Teuchos::tuple(_timerSolve);
   }

  //! Get the iteration count for the most recent call to solve.
  int getNumIters() const {
    return numIters_;
  }


  //@}

  //! @name Solver application methods
  //@{

  /*! \brief This method performs possibly repeated calls to the underlying eigensolver's iterate() routine
   * until the problem has been solved (as decided by the solver manager) or the solver manager decides to
   * quit.
   *
   * \returns ::ReturnType specifying:
   *     - ::Converged: the eigenproblem was solved to the specification required by the solver manager.
   *     - ::Unconverged: the eigenproblem was not solved to the specification desired by the solver manager.
  */
  ReturnType solve();
  //@}

  private:
  Teuchos::RCP<Eigenproblem<ScalarType,MV,OP> > problem_;
  std::string whch_;
  std::string ortho_;

  bool skinny_;
  MagnitudeType convtol_;
  int maxIters_;
  bool relconvtol_;
  enum ResType convNorm_;
  int numIters_;
  int numICGS_;

  Teuchos::RCP<Teuchos::Time> _timerSolve;
  Teuchos::RCP<BasicOutputManager<ScalarType> > printer_;
  Teuchos::ParameterList pl_;
};


////////////////////////////////////////////////////////////////////////////////////////
template<class ScalarType, class MV, class OP>
RTRSolMgr<ScalarType,MV,OP>::RTRSolMgr(
        const Teuchos::RCP<Eigenproblem<ScalarType,MV,OP> > &problem,
        Teuchos::ParameterList &pl ) :
  problem_(problem),
  whch_("SR"),
  skinny_(true),
  convtol_(MT::prec()),
  maxIters_(100),
  relconvtol_(true),
  numIters_(-1),
#ifdef ANASAZI_TEUCHOS_TIME_MONITOR
  _timerSolve(Teuchos::TimeMonitor::getNewTimer("Anasazi: RTRSolMgr::solve()")),
#endif
  pl_(pl)
{
  TEUCHOS_TEST_FOR_EXCEPTION(problem_ == Teuchos::null,              std::invalid_argument, "Problem not given to solver manager.");
  TEUCHOS_TEST_FOR_EXCEPTION(!problem_->isProblemSet(),              std::invalid_argument, "Problem not set.");
  TEUCHOS_TEST_FOR_EXCEPTION(!problem_->isHermitian(),               std::invalid_argument, "Problem not symmetric.");
  TEUCHOS_TEST_FOR_EXCEPTION(problem_->getInitVec() == Teuchos::null,std::invalid_argument, "Problem does not contain initial vectors to clone from.");

  std::string strtmp;

  whch_ = pl_.get("Which","SR");
  TEUCHOS_TEST_FOR_EXCEPTION(whch_ != "SR" && whch_ != "LR",
      std::invalid_argument, "Anasazi::RTRSolMgr: Invalid sorting string. RTR solvers compute only LR or SR.");

  // convergence tolerance
  convtol_ = pl_.get("Convergence Tolerance",convtol_);
  relconvtol_ = pl_.get("Relative Convergence Tolerance",relconvtol_);
  strtmp = pl_.get("Convergence Norm",std::string("2"));
  if (strtmp == "2") {
    convNorm_ = RES_2NORM;
  }
  else if (strtmp == "M") {
    convNorm_ = RES_ORTH;
  }
  else {
    TEUCHOS_TEST_FOR_EXCEPTION(true, std::invalid_argument,
        "Anasazi::RTRSolMgr: Invalid Convergence Norm.");
  }


  // maximum number of (outer) iterations
  maxIters_ = pl_.get("Maximum Iterations",maxIters_);

  // skinny solver or not
  skinny_ = pl_.get("Skinny Solver",skinny_);

  // number if ICGS iterations
  numICGS_ = pl_.get("Num ICGS",2);

  // output stream
  std::string fntemplate = "";
  bool allProcs = false;
  if (pl_.isParameter("Output on all processors")) {
    if (Teuchos::isParameterType<bool>(pl_,"Output on all processors")) {
      allProcs = pl_.get("Output on all processors",allProcs);
    } else {
      allProcs = ( Teuchos::getParameter<int>(pl_,"Output on all processors") != 0 );
    }
  }
  fntemplate = pl_.get("Output filename template",fntemplate);
  int MyPID;
# ifdef HAVE_MPI
    // Initialize MPI
    int mpiStarted = 0;
    MPI_Initialized(&mpiStarted);
    if (mpiStarted) MPI_Comm_rank(MPI_COMM_WORLD, &MyPID);
    else MyPID=0;
# else
    MyPID = 0;
# endif
  if (fntemplate != "") {
    std::ostringstream MyPIDstr;
    MyPIDstr << MyPID;
    // replace %d in fntemplate with MyPID
    int pos, start=0;
    while ( (pos = fntemplate.find("%d",start)) != -1 ) {
      fntemplate.replace(pos,2,MyPIDstr.str());
      start = pos+2;
    }
  }
  Teuchos::RCP<ostream> osp;
  if (fntemplate != "") {
    osp = Teuchos::rcp( new std::ofstream(fntemplate.c_str(),std::ios::out | std::ios::app) );
    if (!*osp) {
      osp = Teuchos::rcpFromRef(std::cout);
      std::cout << "Anasazi::RTRSolMgr::constructor(): Could not open file for write: " << fntemplate << std::endl;
    }
  }
  else {
    osp = Teuchos::rcpFromRef(std::cout);
  }
  // Output manager
  int verbosity = Anasazi::Errors;
  if (pl_.isParameter("Verbosity")) {
    if (Teuchos::isParameterType<int>(pl_,"Verbosity")) {
      verbosity = pl_.get("Verbosity", verbosity);
    } else {
      verbosity = (int)Teuchos::getParameter<Anasazi::MsgType>(pl_,"Verbosity");
    }
  }
  if (allProcs) {
    // print on all procs
    printer_ = Teuchos::rcp( new BasicOutputManager<ScalarType>(verbosity,osp,MyPID) );
  }
  else {
    // print only on proc 0
    printer_ = Teuchos::rcp( new BasicOutputManager<ScalarType>(verbosity,osp,0) );
  }
}


// solve()
template<class ScalarType, class MV, class OP>
ReturnType
RTRSolMgr<ScalarType,MV,OP>::solve() {

  using std::endl;

  // typedef SolverUtils<ScalarType,MV,OP> msutils; // unused

  const int nev = problem_->getNEV();

  // clear num iters
  numIters_ = -1;

#ifdef TEUCHOS_DEBUG
    Teuchos::RCP<Teuchos::FancyOStream>
      out = Teuchos::getFancyOStream(Teuchos::rcpFromRef(printer_->stream(Debug)));
    out->setShowAllFrontMatter(false).setShowProcRank(true);
    *out << "Entering Anasazi::RTRSolMgr::solve()\n";
#endif

  //////////////////////////////////////////////////////////////////////////////////////
  // Sort manager
  Teuchos::RCP<BasicSort<MagnitudeType> > sorter = Teuchos::rcp( new BasicSort<MagnitudeType>(whch_) );

  //////////////////////////////////////////////////////////////////////////////////////
  // Status tests
  //
  Teuchos::RCP<StatusTest<ScalarType,MV,OP> > maxtest;
  Teuchos::RCP<StatusTest<ScalarType,MV,OP> > ordertest;
  Teuchos::RCP<StatusTest<ScalarType,MV,OP> > combotest;
  Teuchos::RCP<StatusTest<ScalarType,MV,OP> > convtest;
  // maximum iters
  if (maxIters_ > 0) {
    maxtest = Teuchos::rcp( new StatusTestMaxIters<ScalarType,MV,OP>(maxIters_) );
  }
  else {
    maxtest = Teuchos::null;
  }
  //
  // convergence
  convtest = Teuchos::rcp( new StatusTestResNorm<ScalarType,MV,OP>(convtol_,nev,convNorm_,relconvtol_) );
  ordertest = Teuchos::rcp( new StatusTestWithOrdering<ScalarType,MV,OP>(convtest,sorter,nev) );
  //
  // combo
  Teuchos::Array<Teuchos::RCP<StatusTest<ScalarType,MV,OP> > > alltests;
  alltests.push_back(ordertest);
  if (maxtest != Teuchos::null) alltests.push_back(maxtest);
  combotest = Teuchos::rcp( new StatusTestCombo<ScalarType,MV,OP>( StatusTestCombo<ScalarType,MV,OP>::OR, alltests) );
  //
  // printing StatusTest
  Teuchos::RCP<StatusTestOutput<ScalarType,MV,OP> > outputtest;
  if ( printer_->isVerbosity(Debug) ) {
    outputtest = Teuchos::rcp( new StatusTestOutput<ScalarType,MV,OP>( printer_,combotest,1,Passed+Failed+Undefined ) );
  }
  else {
    outputtest = Teuchos::rcp( new StatusTestOutput<ScalarType,MV,OP>( printer_,combotest,1,Passed ) );
  }

  //////////////////////////////////////////////////////////////////////////////////////
  // Orthomanager
  Teuchos::RCP<ICGSOrthoManager<ScalarType,MV,OP> > ortho
    = Teuchos::rcp( new ICGSOrthoManager<ScalarType,MV,OP>(problem_->getM(),numICGS_) );

  //////////////////////////////////////////////////////////////////////////////////////
  // create an RTR solver
  // leftmost or rightmost?
  bool leftMost = true;
  if (whch_ == "LR" || whch_ == "LM") {
    leftMost = false;
  }
  pl_.set<bool>("Leftmost",leftMost);
  Teuchos::RCP<RTRBase<ScalarType,MV,OP> > rtr_solver;
  if (skinny_ == false) {
    // "hefty" IRTR
    rtr_solver = Teuchos::rcp( new  IRTR<ScalarType,MV,OP>(problem_,sorter,printer_,outputtest,ortho,pl_) );
  }
  else {
    // "skinny" IRTR
    rtr_solver = Teuchos::rcp( new SIRTR<ScalarType,MV,OP>(problem_,sorter,printer_,outputtest,ortho,pl_) );
  }
  // set any auxiliary vectors defined in the problem
  Teuchos::RCP< const MV > probauxvecs = problem_->getAuxVecs();
  if (probauxvecs != Teuchos::null) {
    rtr_solver->setAuxVecs( Teuchos::tuple< Teuchos::RCP<const MV> >(probauxvecs) );
  }

  TEUCHOS_TEST_FOR_EXCEPTION(rtr_solver->getBlockSize() < problem_->getNEV(),std::logic_error,
            "Anasazi::RTRSolMgr requires block size >= requested number of eigenvalues.");

  int numfound = 0;
  Teuchos::RCP<MV> foundvecs;
  std::vector<MagnitudeType> foundvals;

  // tell the solver to iterate
  try {
#ifdef ANASAZI_TEUCHOS_TIME_MONITOR
    Teuchos::TimeMonitor slvtimer(*_timerSolve);
#endif
    rtr_solver->iterate();
    numIters_ = rtr_solver->getNumIters();
  }
  catch (const std::exception &e) {
    // we are a simple solver manager. we don't catch exceptions. set solution empty, then rethrow.
    printer_->stream(Anasazi::Errors) << "Exception: " << e.what() << endl;
    Eigensolution<ScalarType,MV> sol;
    sol.numVecs = 0;
    problem_->setSolution(sol);
    throw;
  }

  // check the status tests
  if (convtest->getStatus() == Passed || (maxtest != Teuchos::null && maxtest->getStatus() == Passed))
  {
    int num = convtest->howMany();
    if (num > 0) {
      std::vector<int> ind = convtest->whichVecs();
      // copy the converged eigenvectors
      foundvecs = MVT::CloneCopy(*rtr_solver->getRitzVectors(),ind);
      // copy the converged eigenvalues
      foundvals.resize(num);
      std::vector<Value<ScalarType> > all = rtr_solver->getRitzValues();
      for (int i=0; i<num; i++) {
        foundvals[i] = all[ind[i]].realpart;
      }
      numfound = num;
    }
  }
  else {
    TEUCHOS_TEST_FOR_EXCEPTION(true,std::logic_error,"Anasazi::RTRSolMgr::solve(): solver returned without satisfy status test.");
  }

  // create contiguous storage for all eigenvectors, eigenvalues
  Eigensolution<ScalarType,MV> sol;
  sol.numVecs = numfound;
  sol.Evecs = foundvecs;
  sol.Espace = sol.Evecs;
  sol.Evals.resize(sol.numVecs);
  for (int i=0; i<sol.numVecs; i++) {
    sol.Evals[i].realpart = foundvals[i];
  }
  // all real eigenvalues: set index vectors [0,...,numfound-1]
  sol.index.resize(numfound,0);

  // print final summary
  rtr_solver->currentStatus(printer_->stream(FinalSummary));

  // print timing information
#ifdef ANASAZI_TEUCHOS_TIME_MONITOR
  if ( printer_->isVerbosity( TimingDetails ) ) {
    Teuchos::TimeMonitor::summarize( printer_->stream( TimingDetails ) );
  }
#endif

  // send the solution to the eigenproblem
  problem_->setSolution(sol);
  printer_->stream(Debug) << "Returning " << sol.numVecs << " eigenpairs to eigenproblem." << endl;

  // return from SolMgr::solve()
  if (sol.numVecs < nev) return Unconverged;
  return Converged;
}




} // end Anasazi namespace

#endif /* ANASAZI_RTR_SOLMGR_HPP */