/usr/include/trilinos/klu2_analyze_given.hpp is in libtrilinos-amesos2-dev 12.12.1-5.
This file is owned by root:root, with mode 0o644.
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/* === klu_analyze_given ==================================================== */
/* ========================================================================== */
// @HEADER
// ***********************************************************************
//
// KLU2: A Direct Linear Solver package
// Copyright 2011 Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, with Sandia Corporation, the
// U.S. Government retains certain rights in this software.
//
// This library is free software; you can redistribute it and/or modify
// it under the terms of the GNU Lesser General Public License as
// published by the Free Software Foundation; either version 2.1 of the
// License, or (at your option) any later version.
//
// This library is distributed in the hope that it will be useful, but
// WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301
// USA
// Questions? Contact Mike A. Heroux (maherou@sandia.gov)
//
// KLU2 is derived work from KLU, licensed under LGPL, and copyrighted by
// University of Florida. The Authors of KLU are Timothy A. Davis and
// Eka Palamadai. See Doc/KLU_README.txt for the licensing and copyright
// information for KLU.
//
// ***********************************************************************
// @HEADER
/* Given an input permutation P and Q, create the Symbolic object. BTF can
* be done to modify the user's P and Q (does not perform the max transversal;
* just finds the strongly-connected components). */
#ifndef KLU2_ANALYZE_GIVEN_HPP
#define KLU2_ANALYZE_GIVEN_HPP
#include "klu2_internal.h"
#include "klu2_memory.hpp"
/* ========================================================================== */
/* === klu_alloc_symbolic =================================================== */
/* ========================================================================== */
/* Allocate Symbolic object, and check input matrix. Not user callable. */
template <typename Entry, typename Int>
KLU_symbolic<Entry, Int> *KLU_alloc_symbolic
(
Int n,
Int *Ap,
Int *Ai,
KLU_common<Entry, Int> *Common
)
{
KLU_symbolic<Entry, Int> *Symbolic ;
Int *P, *Q, *R ;
double *Lnz ;
Int nz, i, j, p, pend ;
if (Common == NULL)
{
return (NULL) ;
}
Common->status = KLU_OK ;
/* A is n-by-n, with n > 0. Ap [0] = 0 and nz = Ap [n] >= 0 required.
* Ap [j] <= Ap [j+1] must hold for all j = 0 to n-1. Row indices in Ai
* must be in the range 0 to n-1, and no duplicate entries can be present.
* The list of row indices in each column of A need not be sorted.
*/
if (n <= 0 || Ap == NULL || Ai == NULL)
{
/* Ap and Ai must be present, and n must be > 0 */
Common->status = KLU_INVALID ;
return (NULL) ;
}
nz = Ap [n] ;
if (Ap [0] != 0 || nz < 0)
{
/* nz must be >= 0 and Ap [0] must equal zero */
Common->status = KLU_INVALID ;
return (NULL) ;
}
for (j = 0 ; j < n ; j++)
{
if (Ap [j] > Ap [j+1])
{
/* column pointers must be non-decreasing */
Common->status = KLU_INVALID ;
return (NULL) ;
}
}
P = (Int *) KLU_malloc (n, sizeof (Int), Common) ;
if (Common->status < KLU_OK)
{
/* out of memory */
Common->status = KLU_OUT_OF_MEMORY ;
return (NULL) ;
}
for (i = 0 ; i < n ; i++)
{
P [i] = EMPTY ;
}
for (j = 0 ; j < n ; j++)
{
pend = Ap [j+1] ;
for (p = Ap [j] ; p < pend ; p++)
{
i = Ai [p] ;
if (i < 0 || i >= n || P [i] == j)
{
/* row index out of range, or duplicate entry */
KLU_free (P, n, sizeof (Int), Common) ;
Common->status = KLU_INVALID ;
return (NULL) ;
}
/* flag row i as appearing in column j */
P [i] = j ;
}
}
/* ---------------------------------------------------------------------- */
/* allocate the Symbolic object */
/* ---------------------------------------------------------------------- */
Symbolic = (KLU_symbolic<Entry, Int> *) KLU_malloc (sizeof (KLU_symbolic<Entry, Int>), 1, Common) ;
if (Common->status < KLU_OK)
{
/* out of memory */
KLU_free (P, n, sizeof (Int), Common) ;
Common->status = KLU_OUT_OF_MEMORY ;
return (NULL) ;
}
Q = (Int *) KLU_malloc (n, sizeof (Int), Common) ;
R = (Int *) KLU_malloc (n+1, sizeof (Int), Common) ;
Lnz = (double *) KLU_malloc (n, sizeof (double), Common) ;
Symbolic->n = n ;
Symbolic->nz = nz ;
Symbolic->P = P ;
Symbolic->Q = Q ;
Symbolic->R = R ;
Symbolic->Lnz = Lnz ;
if (Common->status < KLU_OK)
{
/* out of memory */
KLU_free_symbolic (&Symbolic, Common) ;
Common->status = KLU_OUT_OF_MEMORY ;
return (NULL) ;
}
return (Symbolic) ;
}
/* ========================================================================== */
/* === KLU_analyze_given ==================================================== */
/* ========================================================================== */
template <typename Entry, typename Int>
KLU_symbolic<Entry, Int> *KLU_analyze_given /* returns NULL if error, or a valid
KLU_symbolic object if successful */
(
/* inputs, not modified */
Int n, /* A is n-by-n */
Int Ap [ ], /* size n+1, column pointers */
Int Ai [ ], /* size nz, row indices */
Int Puser [ ], /* size n, user's row permutation (may be NULL) */
Int Quser [ ], /* size n, user's column permutation (may be NULL) */
/* -------------------- */
KLU_common<Entry, Int> *Common
)
{
KLU_symbolic<Entry, Int> *Symbolic ;
double *Lnz ;
Int nblocks, nz, block, maxblock, *P, *Q, *R, nzoff, p, pend, do_btf, k ;
/* ---------------------------------------------------------------------- */
/* determine if input matrix is valid, and get # of nonzeros */
/* ---------------------------------------------------------------------- */
Symbolic = KLU_alloc_symbolic (n, Ap, Ai, Common) ;
if (Symbolic == NULL)
{
return (NULL) ;
}
P = Symbolic->P ;
Q = Symbolic->Q ;
R = Symbolic->R ;
Lnz = Symbolic->Lnz ;
nz = Symbolic->nz ;
/* ---------------------------------------------------------------------- */
/* Q = Quser, or identity if Quser is NULL */
/* ---------------------------------------------------------------------- */
if (Quser == (Int *) NULL)
{
for (k = 0 ; k < n ; k++)
{
Q [k] = k ;
}
}
else
{
for (k = 0 ; k < n ; k++)
{
Q [k] = Quser [k] ;
}
}
/* ---------------------------------------------------------------------- */
/* get the control parameters for BTF and ordering method */
/* ---------------------------------------------------------------------- */
do_btf = Common->btf ;
do_btf = (do_btf) ? TRUE : FALSE ;
Symbolic->ordering = 2 ;
Symbolic->do_btf = do_btf ;
/* ---------------------------------------------------------------------- */
/* find the block triangular form, if requested */
/* ---------------------------------------------------------------------- */
if (do_btf)
{
/* ------------------------------------------------------------------ */
/* get workspace for BTF_strongcomp */
/* ------------------------------------------------------------------ */
Int *Pinv, *Work, *Bi, k1, k2, nk, oldcol ;
Work = (Int *) KLU_malloc (4*n, sizeof (Int), Common) ;
Pinv = (Int *) KLU_malloc (n, sizeof (Int), Common) ;
if (Puser != (Int *) NULL)
{
Bi = (Int *) KLU_malloc (nz+1, sizeof (Int), Common) ;
}
else
{
Bi = Ai ;
}
if (Common->status < KLU_OK)
{
/* out of memory */
KLU_free (Work, 4*n, sizeof (Int), Common) ;
KLU_free (Pinv, n, sizeof (Int), Common) ;
if (Puser != (Int *) NULL)
{
KLU_free (Bi, nz+1, sizeof (Int), Common) ;
}
KLU_free_symbolic (&Symbolic, Common) ;
Common->status = KLU_OUT_OF_MEMORY ;
return (NULL) ;
}
/* ------------------------------------------------------------------ */
/* B = Puser * A */
/* ------------------------------------------------------------------ */
if (Puser != (Int *) NULL)
{
for (k = 0 ; k < n ; k++)
{
Pinv [Puser [k]] = k ;
}
for (p = 0 ; p < nz ; p++)
{
Bi [p] = Pinv [Ai [p]] ;
}
}
/* ------------------------------------------------------------------ */
/* find the strongly-connected components */
/* ------------------------------------------------------------------ */
/* TODO : Correct version of BTF */
/* modifies Q, and determines P and R */
/*nblocks = BTF_strongcomp (n, Ap, Bi, Q, P, R, Work) ;*/
nblocks = KLU_OrdinalTraits<Int>::btf_strongcomp (n, Ap, Bi, Q, P, R,
Work) ;
/* ------------------------------------------------------------------ */
/* P = P * Puser */
/* ------------------------------------------------------------------ */
if (Puser != (Int *) NULL)
{
for (k = 0 ; k < n ; k++)
{
Work [k] = Puser [P [k]] ;
}
for (k = 0 ; k < n ; k++)
{
P [k] = Work [k] ;
}
}
/* ------------------------------------------------------------------ */
/* Pinv = inverse of P */
/* ------------------------------------------------------------------ */
for (k = 0 ; k < n ; k++)
{
Pinv [P [k]] = k ;
}
/* ------------------------------------------------------------------ */
/* analyze each block */
/* ------------------------------------------------------------------ */
nzoff = 0 ; /* nz in off-diagonal part */
maxblock = 1 ; /* size of the largest block */
for (block = 0 ; block < nblocks ; block++)
{
/* -------------------------------------------------------------- */
/* the block is from rows/columns k1 to k2-1 */
/* -------------------------------------------------------------- */
k1 = R [block] ;
k2 = R [block+1] ;
nk = k2 - k1 ;
PRINTF (("BLOCK %d, k1 %d k2-1 %d nk %d\n", block, k1, k2-1, nk)) ;
maxblock = MAX (maxblock, nk) ;
/* -------------------------------------------------------------- */
/* scan the kth block, C */
/* -------------------------------------------------------------- */
for (k = k1 ; k < k2 ; k++)
{
oldcol = Q [k] ;
pend = Ap [oldcol+1] ;
for (p = Ap [oldcol] ; p < pend ; p++)
{
if (Pinv [Ai [p]] < k1)
{
nzoff++ ;
}
}
}
/* fill-in not estimated */
Lnz [block] = EMPTY ;
}
/* ------------------------------------------------------------------ */
/* free all workspace */
/* ------------------------------------------------------------------ */
KLU_free (Work, 4*n, sizeof (Int), Common) ;
KLU_free (Pinv, n, sizeof (Int), Common) ;
if (Puser != (Int *) NULL)
{
KLU_free (Bi, nz+1, sizeof (Int), Common) ;
}
}
else
{
/* ------------------------------------------------------------------ */
/* BTF not requested */
/* ------------------------------------------------------------------ */
nzoff = 0 ;
nblocks = 1 ;
maxblock = n ;
R [0] = 0 ;
R [1] = n ;
Lnz [0] = EMPTY ;
/* ------------------------------------------------------------------ */
/* P = Puser, or identity if Puser is NULL */
/* ------------------------------------------------------------------ */
for (k = 0 ; k < n ; k++)
{
P [k] = (Puser == NULL) ? k : Puser [k] ;
}
}
/* ---------------------------------------------------------------------- */
/* return the symbolic object */
/* ---------------------------------------------------------------------- */
Symbolic->nblocks = nblocks ;
Symbolic->maxblock = maxblock ;
Symbolic->lnz = EMPTY ;
Symbolic->unz = EMPTY ;
Symbolic->nzoff = nzoff ;
return (Symbolic) ;
}
#endif /* KLU2_ANALYZE_GIVEN_HPP */
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