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//
// ***********************************************************************
//
// Amesos2: Templated Direct Sparse Solver Package
// Copyright 2011 Sandia Corporation
//
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// contributors may be used to endorse or promote products derived from
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// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
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// @HEADER
/**
\file Amesos2_Util.hpp
\author Eric T Bavier <etbavier@sandia.gov>
\date Thu May 27 13:11:13 CDT 2010
\brief Utility functions for Amesos2
*/
#ifndef AMESOS2_UTIL_HPP
#define AMESOS2_UTIL_HPP
#include "Amesos2_config.h"
#include <Teuchos_RCP.hpp>
#include <Teuchos_BLAS_types.hpp>
#include <Teuchos_ArrayView.hpp>
#include <Teuchos_FancyOStream.hpp>
#include <Tpetra_Map.hpp>
#include <Tpetra_DistObject_decl.hpp>
#include <Tpetra_ComputeGatherMap.hpp> // added for gather map... where is the best place??
#include "Amesos2_TypeDecl.hpp"
#include "Amesos2_Meta.hpp"
#ifdef HAVE_TPETRA_INST_INT_INT
#ifdef HAVE_AMESOS2_EPETRA
#include <Epetra_Map.h>
#endif
#endif
namespace Amesos2 {
namespace Util {
/**
* \internal
* \defgroup amesos2_util Amesos2 Utilities
* @{
*/
using Teuchos::RCP;
using Teuchos::ArrayView;
using Meta::is_same;
using Meta::if_then_else;
/**
* \brief Gets a Tpetra::Map described by the EDistribution.
*
* \param distribution The distribution that the returned map will conform to
* \param num_global_elements A global_size_t value that gives the number of
* global elements in the map.
* \param comm The communicator to create the map on.
*
* \tparam LO The local ordinal type
* \tparam GO The global ordinal type
* \tparam GS The global size type
* \tparam Node The Kokkos node type
*
* \ingroup amesos2_utils
*/
template <typename LO, typename GO, typename GS, typename Node>
const Teuchos::RCP<const Tpetra::Map<LO,GO,Node> >
getGatherMap( const Teuchos::RCP< const Tpetra::Map<LO,GO,Node> > &map );
template <typename LO, typename GO, typename GS, typename Node>
const Teuchos::RCP<const Tpetra::Map<LO,GO,Node> >
getDistributionMap(EDistribution distribution,
GS num_global_elements,
const Teuchos::RCP<const Teuchos::Comm<int> >& comm,
GO indexBase = 0,
const Teuchos::RCP<const Tpetra::Map<LO,GO,Node> >& map = Teuchos::null);
#ifdef HAVE_TPETRA_INST_INT_INT
#ifdef HAVE_AMESOS2_EPETRA
/**
* \brief Transform an Epetra_Map object into a Tpetra::Map
*
* \ingroup amesos2_utils
*/
template <typename LO, typename GO, typename GS, typename Node>
RCP<Tpetra::Map<LO,GO,Node> >
epetra_map_to_tpetra_map(const Epetra_BlockMap& map);
/**
* \brief Transform a Tpetra::Map object into an Epetra_Map
*
* \ingroup amesos2_utils
*/
template <typename LO, typename GO, typename GS, typename Node>
RCP<Epetra_Map>
tpetra_map_to_epetra_map(const Tpetra::Map<LO,GO,Node>& map);
/**
* \brief Transform an Epetra_Comm object into a Teuchos::Comm object
*
* \ingroup amesos2_utils
*/
const RCP<const Teuchos::Comm<int> > to_teuchos_comm(RCP<const Epetra_Comm> c);
/**
* \brief Transfrom a Teuchos::Comm object into an Epetra_Comm object
*
* \ingroup amesos2_utils
*/
const RCP<const Epetra_Comm> to_epetra_comm(RCP<const Teuchos::Comm<int> > c);
#endif // HAVE_AMESOS2_EPETRA
#endif // HAVE_TPETRA_INST_INT_INT
/**
* Transposes the compressed sparse matrix representation.
*
* \ingroup amesos2_utils
*/
template <typename Scalar,
typename GlobalOrdinal,
typename GlobalSizeT>
void transpose(ArrayView<Scalar> vals,
ArrayView<GlobalOrdinal> indices,
ArrayView<GlobalSizeT> ptr,
ArrayView<Scalar> trans_vals,
ArrayView<GlobalOrdinal> trans_indices,
ArrayView<GlobalSizeT> trans_ptr);
/**
* \brief Scales a 1-D representation of a multivector.
*
* \param [in/out] vals The values of the multi-vector. On exit will contain the scaled values.
* \param [in] l The length of each vector in the multivector
* \param [in] ld The leading dimension of the multivector
* \param [in] s Contains the scaling factors of the diagonal scaling matrix
*
* The first vector will be scaled by \c s[0] , the second vector
* by \c s[1] , etc.
*
* \ingroup amesos2_utils
*/
template <typename Scalar1, typename Scalar2>
void scale(ArrayView<Scalar1> vals, size_t l,
size_t ld, ArrayView<Scalar2> s);
/**
* \brief Scales a 1-D representation of a multivector.
*
* \param [in/out] vals The values of the multi-vector. On exit will contain the scaled values.
* \param [in] l The length of each vector in the multivector
* \param [in] ld The leading dimension of the multivector
* \param [in] s Contains the scaling factors of the diagonal scaling matrix
*
* Scales each vector by diag(s), with the scaling multiplication
* being performed by the `binary_op' parameter. BinaryOp is some
* class that defines a \c operator() method as
*
* \code
* Scalar1 operator()(Scalar1 x, Scalar2 y){ }
* \endcode
*
* \ingroup amesos2_utils
*/
template <typename Scalar1, typename Scalar2, class BinaryOp>
void scale(ArrayView<Scalar1> vals, size_t l,
size_t ld, ArrayView<Scalar2> s, BinaryOp binary_op);
/// Prints a line of 70 "-"s on std::cout.
void printLine( Teuchos::FancyOStream &out );
//////////////////////////////////
// Matrix/MultiVector Utilities //
//////////////////////////////////
#ifndef DOXYGEN_SHOULD_SKIP_THIS
/*
* The following represents a general way of getting a CRS or CCS
* representation of a matrix with implicit type conversions. The
* \c get_crs_helper and \c get_ccs_helper classes are templated
* on 4 types:
*
* - A Matrix type (conforming to the Amesos2 MatrixAdapter interface)
* - A scalar type
* - A global ordinal type
* - A global size type
*
* The last three template types correspond to the input argument
* types. For example, if the scalar type is \c double , then we
* require that the \c nzvals argument is a \c
* Teuchos::ArrayView<double> type.
*
* These helpers perform any type conversions that must be
* performed to go between the Matrix's types and the input types.
* If no conversions are necessary the static functions can be
* effectively inlined.
*/
template <class M, typename S, typename GO, typename GS, class Op>
struct same_gs_helper
{
static void do_get(const Teuchos::Ptr<const M> mat,
const ArrayView<typename M::scalar_t> nzvals,
const ArrayView<typename M::global_ordinal_t> indices,
const ArrayView<GS> pointers,
GS& nnz,
const Teuchos::Ptr<
const Tpetra::Map<typename M::local_ordinal_t,
typename M::global_ordinal_t,
typename M::node_t> > map,
EDistribution distribution,
EStorage_Ordering ordering)
{
Op::apply(mat, nzvals, indices, pointers, nnz, map, distribution, ordering);
}
};
template <class M, typename S, typename GO, typename GS, class Op>
struct diff_gs_helper
{
static void do_get(const Teuchos::Ptr<const M> mat,
const ArrayView<typename M::scalar_t> nzvals,
const ArrayView<typename M::global_ordinal_t> indices,
const ArrayView<GS> pointers,
GS& nnz,
const Teuchos::Ptr<
const Tpetra::Map<typename M::local_ordinal_t,
typename M::global_ordinal_t,
typename M::node_t> > map,
EDistribution distribution,
EStorage_Ordering ordering)
{
typedef typename M::global_size_t mat_gs_t;
typename ArrayView<GS>::size_type i, size = pointers.size();
Teuchos::Array<mat_gs_t> pointers_tmp(size);
mat_gs_t nnz_tmp = 0;
Op::apply(mat, nzvals, indices, pointers_tmp, nnz_tmp, map, distribution, ordering);
for (i = 0; i < size; ++i){
pointers[i] = Teuchos::as<GS>(pointers_tmp[i]);
}
nnz = Teuchos::as<GS>(nnz_tmp);
}
};
template <class M, typename S, typename GO, typename GS, class Op>
struct same_go_helper
{
static void do_get(const Teuchos::Ptr<const M> mat,
const ArrayView<typename M::scalar_t> nzvals,
const ArrayView<GO> indices,
const ArrayView<GS> pointers,
GS& nnz,
const Teuchos::Ptr<
const Tpetra::Map<typename M::local_ordinal_t,
typename M::global_ordinal_t,
typename M::node_t> > map,
EDistribution distribution,
EStorage_Ordering ordering)
{
typedef typename M::global_size_t mat_gs_t;
if_then_else<is_same<GS,mat_gs_t>::value,
same_gs_helper<M,S,GO,GS,Op>,
diff_gs_helper<M,S,GO,GS,Op> >::type::do_get(mat, nzvals, indices,
pointers, nnz, map,
distribution, ordering);
}
};
template <class M, typename S, typename GO, typename GS, class Op>
struct diff_go_helper
{
static void do_get(const Teuchos::Ptr<const M> mat,
const ArrayView<typename M::scalar_t> nzvals,
const ArrayView<GO> indices,
const ArrayView<GS> pointers,
GS& nnz,
const Teuchos::Ptr<
const Tpetra::Map<typename M::local_ordinal_t,
typename M::global_ordinal_t,
typename M::node_t> > map,
EDistribution distribution,
EStorage_Ordering ordering)
{
typedef typename M::global_ordinal_t mat_go_t;
typedef typename M::global_size_t mat_gs_t;
typename ArrayView<GO>::size_type i, size = indices.size();
Teuchos::Array<mat_go_t> indices_tmp(size);
if_then_else<is_same<GS,mat_gs_t>::value,
same_gs_helper<M,S,GO,GS,Op>,
diff_gs_helper<M,S,GO,GS,Op> >::type::do_get(mat, nzvals, indices_tmp,
pointers, nnz, map,
distribution, ordering);
for (i = 0; i < size; ++i){
indices[i] = Teuchos::as<GO>(indices_tmp[i]);
}
}
};
template <class M, typename S, typename GO, typename GS, class Op>
struct same_scalar_helper
{
static void do_get(const Teuchos::Ptr<const M> mat,
const ArrayView<S> nzvals,
const ArrayView<GO> indices,
const ArrayView<GS> pointers,
GS& nnz,
const Teuchos::Ptr<
const Tpetra::Map<typename M::local_ordinal_t,
typename M::global_ordinal_t,
typename M::node_t> > map,
EDistribution distribution,
EStorage_Ordering ordering)
{
typedef typename M::global_ordinal_t mat_go_t;
if_then_else<is_same<GO,mat_go_t>::value,
same_go_helper<M,S,GO,GS,Op>,
diff_go_helper<M,S,GO,GS,Op> >::type::do_get(mat, nzvals, indices,
pointers, nnz, map,
distribution, ordering);
}
};
template <class M, typename S, typename GO, typename GS, class Op>
struct diff_scalar_helper
{
static void do_get(const Teuchos::Ptr<const M> mat,
const ArrayView<S> nzvals,
const ArrayView<GO> indices,
const ArrayView<GS> pointers,
GS& nnz,
const Teuchos::Ptr<
const Tpetra::Map<typename M::local_ordinal_t,
typename M::global_ordinal_t,
typename M::node_t> > map,
EDistribution distribution,
EStorage_Ordering ordering)
{
typedef typename M::scalar_t mat_scalar_t;
typedef typename M::global_ordinal_t mat_go_t;
typename ArrayView<S>::size_type i, size = nzvals.size();
Teuchos::Array<mat_scalar_t> nzvals_tmp(size);
if_then_else<is_same<GO,mat_go_t>::value,
same_go_helper<M,S,GO,GS,Op>,
diff_go_helper<M,S,GO,GS,Op> >::type::do_get(mat, nzvals_tmp, indices,
pointers, nnz, map,
distribution, ordering);
for (i = 0; i < size; ++i){
nzvals[i] = Teuchos::as<S>(nzvals_tmp[i]);
}
}
};
#endif // DOXYGEN_SHOULD_SKIP_THIS
/**
* \brief A generic base class for the CRS and CCS helpers.
*
* S, GO, and GS are the desired types. They are also the types
* of the respective input parameters. Matrix is expected to be
* an Amesos2 MatrixAdapter type.
*
* The \c Op template parameter is a function-like class that
* provides a static \c apply() function.
*
* \ingroup amesos2_util
*/
template<class Matrix, typename S, typename GO, typename GS, class Op>
struct get_cxs_helper
{
static void do_get(const Teuchos::Ptr<const Matrix> mat,
const ArrayView<S> nzvals,
const ArrayView<GO> indices,
const ArrayView<GS> pointers,
GS& nnz,
EDistribution distribution,
EStorage_Ordering ordering=ARBITRARY,
GO indexBase = 0)
{
typedef typename Matrix::local_ordinal_t lo_t;
typedef typename Matrix::global_ordinal_t go_t;
typedef typename Matrix::global_size_t gs_t;
typedef typename Matrix::node_t node_t;
const Teuchos::RCP<const Tpetra::Map<lo_t,go_t,node_t> > map
= getDistributionMap<lo_t,go_t,gs_t,node_t>(distribution,
Op::get_dimension(mat),
mat->getComm(),
indexBase,
Op::getMapFromMatrix(mat) //getMap must be the map returned, NOT rowmap or colmap
);
do_get(mat, nzvals, indices, pointers, nnz, Teuchos::ptrInArg(*map), distribution, ordering);
}
/**
* Basic function overload that uses the matrix's row/col map as
* returned by Op::getMap().
*/
static void do_get(const Teuchos::Ptr<const Matrix> mat,
const ArrayView<S> nzvals,
const ArrayView<GO> indices,
const ArrayView<GS> pointers,
GS& nnz,
EDistribution distribution, // Does this one need a distribution argument??
EStorage_Ordering ordering=ARBITRARY)
{
const Teuchos::RCP<const Tpetra::Map<typename Matrix::local_ordinal_t,
typename Matrix::global_ordinal_t,
typename Matrix::node_t> > map
= Op::getMap(mat);
do_get(mat, nzvals, indices, pointers, nnz, Teuchos::ptrInArg(*map), distribution, ordering);
}
/**
* Function overload that takes an explicit map to use for the
* representation's distribution.
*/
static void do_get(const Teuchos::Ptr<const Matrix> mat,
const ArrayView<S> nzvals,
const ArrayView<GO> indices,
const ArrayView<GS> pointers,
GS& nnz,
const Teuchos::Ptr<
const Tpetra::Map<typename Matrix::local_ordinal_t,
typename Matrix::global_ordinal_t,
typename Matrix::node_t> > map,
EDistribution distribution,
EStorage_Ordering ordering=ARBITRARY)
{
typedef typename Matrix::scalar_t mat_scalar;
if_then_else<is_same<mat_scalar,S>::value,
same_scalar_helper<Matrix,S,GO,GS,Op>,
diff_scalar_helper<Matrix,S,GO,GS,Op> >::type::do_get(mat,
nzvals, indices,
pointers, nnz,
map,
distribution, ordering);
}
};
#ifndef DOXYGEN_SHOULD_SKIP_THIS
/*
* These two function-like classes are meant to be used as the \c
* Op template parameter for the \c get_cxs_helper template class.
*/
template<class Matrix>
struct get_ccs_func
{
static void apply(const Teuchos::Ptr<const Matrix> mat,
const ArrayView<typename Matrix::scalar_t> nzvals,
const ArrayView<typename Matrix::global_ordinal_t> rowind,
const ArrayView<typename Matrix::global_size_t> colptr,
typename Matrix::global_size_t& nnz,
const Teuchos::Ptr<
const Tpetra::Map<typename Matrix::local_ordinal_t,
typename Matrix::global_ordinal_t,
typename Matrix::node_t> > map,
EDistribution distribution,
EStorage_Ordering ordering)
{
mat->getCcs(nzvals, rowind, colptr, nnz, map, ordering, distribution);
//mat->getCcs(nzvals, rowind, colptr, nnz, map, ordering);
}
static
const Teuchos::RCP<const Tpetra::Map<typename Matrix::local_ordinal_t,
typename Matrix::global_ordinal_t,
typename Matrix::node_t> >
getMapFromMatrix(const Teuchos::Ptr<const Matrix> mat)
{
return mat->getMap(); // returns Teuchos::null if mat is Epetra_CrsMatrix
}
static
const Teuchos::RCP<const Tpetra::Map<typename Matrix::local_ordinal_t,
typename Matrix::global_ordinal_t,
typename Matrix::node_t> >
getMap(const Teuchos::Ptr<const Matrix> mat)
{
return mat->getColMap();
}
static
typename Matrix::global_size_t
get_dimension(const Teuchos::Ptr<const Matrix> mat)
{
return mat->getGlobalNumCols();
}
};
template<class Matrix>
struct get_crs_func
{
static void apply(const Teuchos::Ptr<const Matrix> mat,
const ArrayView<typename Matrix::scalar_t> nzvals,
const ArrayView<typename Matrix::global_ordinal_t> colind,
const ArrayView<typename Matrix::global_size_t> rowptr,
typename Matrix::global_size_t& nnz,
const Teuchos::Ptr<
const Tpetra::Map<typename Matrix::local_ordinal_t,
typename Matrix::global_ordinal_t,
typename Matrix::node_t> > map,
EDistribution distribution,
EStorage_Ordering ordering)
{
mat->getCrs(nzvals, colind, rowptr, nnz, map, ordering, distribution);
//mat->getCrs(nzvals, colind, rowptr, nnz, map, ordering);
}
static
const Teuchos::RCP<const Tpetra::Map<typename Matrix::local_ordinal_t,
typename Matrix::global_ordinal_t,
typename Matrix::node_t> >
getMapFromMatrix(const Teuchos::Ptr<const Matrix> mat)
{
return mat->getMap(); // returns Teuchos::null if mat is Epetra_CrsMatrix
}
static
const Teuchos::RCP<const Tpetra::Map<typename Matrix::local_ordinal_t,
typename Matrix::global_ordinal_t,
typename Matrix::node_t> >
getMap(const Teuchos::Ptr<const Matrix> mat)
{
return mat->getRowMap();
}
static
typename Matrix::global_size_t
get_dimension(const Teuchos::Ptr<const Matrix> mat)
{
return mat->getGlobalNumRows();
}
};
#endif // DOXYGEN_SHOULD_SKIP_THIS
/**
* \brief A generic helper class for getting a CCS representation
* of a Matrix.
*
* The template types \c S , \c GO , and \c GS (scalar, global
* ordinal, and global size type, respectively) are the types that
* you would like to get from the Matrix, regardless of what types
* are actually housed in the matrix. Type conversions will be
* performed when necessary.
*
* \subsection get_ccs_helper_example Example:
*
* Say for example that you have a matrix that has \c
* complex<double> scalar values, \c int global ordinals, and
* unsigned long size type, but your solver has a special complex
* data type that it defines and has size type \c int. As long as
* the Teuchos::ValueTypeConversionTraits class is specialized for
* conversion between the \c complex<double> and the solver's
* complex double type, then you can use this helper to help with
* this conversion. We assume that we want the global matrix
* representation at the root processor (\c Rooted), and the row
* indices can be in an arbitrary order (\c Arbitrary):
*
* \code
* // with unsigned long size_t
* typedef Tpetra::CrsMatrix<std::complex<double>, int, int> mat_t;
* mat_t my_mat;
* // initialize mt_mat
* Array<solver_complex> nzvals(nnz);
* Array<int> rowind(nnz);
* Array<int> colptr(numcols+1);
* get_ccs_helper<mat_t,solver_complex,int,int>::do_get(mat,nzvals,rowind,rowptr,nnz,Rooted,Arbitrary);
* \endcode
*
* \sa \ref get_crs_helper
* \ingroup amesos2_util
*/
template<class Matrix, typename S, typename GO, typename GS>
struct get_ccs_helper : get_cxs_helper<Matrix,S,GO,GS,get_ccs_func<Matrix> >
{};
/**
* \brief Similar to get_ccs_helper , but used to get a CRS
* representation of the given matrix.
*
* \sa \ref get_ccs_helper
* \ingroup amesos2_util
*/
template<class Matrix, typename S, typename GO, typename GS>
struct get_crs_helper : get_cxs_helper<Matrix,S,GO,GS,get_crs_func<Matrix> >
{};
/* End Matrix/MultiVector Utilities */
////////////////////////////////////////
// Definitions //
////////////////////////////////////////
template <typename LO, typename GO, typename GS, typename Node>
const Teuchos::RCP<const Tpetra::Map<LO,GO,Node> >
getGatherMap( const Teuchos::RCP< const Tpetra::Map<LO,GO,Node> > &map )
{
//RCP<Teuchos::FancyOStream> fos = Teuchos::fancyOStream( Teuchos::null ); // may need to pass an osstream to computeGatherMap for debugging cases...
Teuchos::RCP< const Tpetra::Map<LO,GO,Node> > gather_map = Tpetra::Details::computeGatherMap(map, Teuchos::null);
return gather_map;
}
template <typename LO, typename GO, typename GS, typename Node>
const Teuchos::RCP<const Tpetra::Map<LO,GO,Node> >
getDistributionMap(EDistribution distribution,
GS num_global_elements,
const Teuchos::RCP<const Teuchos::Comm<int> >& comm,
GO indexBase,
const Teuchos::RCP<const Tpetra::Map<LO,GO,Node> >& map)
{
// TODO: Need to add indexBase to cases other than ROOTED
// We do not support these maps in any solver now.
switch( distribution ){
case DISTRIBUTED:
case DISTRIBUTED_NO_OVERLAP:
return Tpetra::createUniformContigMapWithNode<LO,GO, Node>(num_global_elements, comm);
case GLOBALLY_REPLICATED:
return Tpetra::createLocalMapWithNode<LO,GO, Node>(num_global_elements, comm);
case ROOTED:
{
int rank = Teuchos::rank(*comm);
size_t my_num_elems = Teuchos::OrdinalTraits<size_t>::zero();
if( rank == 0 ) { my_num_elems = num_global_elements; }
return rcp(new Tpetra::Map<LO,GO, Node>(num_global_elements,
my_num_elems, indexBase, comm));
}
case CONTIGUOUS_AND_ROOTED:
{
const Teuchos::RCP<const Tpetra::Map<LO,GO,Node> > gathermap
= getGatherMap<LO,GO,GS,Node>( map ); //getMap must be the map returned, NOT rowmap or colmap
return gathermap;
}
default:
TEUCHOS_TEST_FOR_EXCEPTION( true,
std::logic_error,
"Control should never reach this point. "
"Please contact the Amesos2 developers." );
}
}
#ifdef HAVE_TPETRA_INST_INT_INT
#ifdef HAVE_AMESOS2_EPETRA
//#pragma message "include 3"
//#include <Epetra_Map.h>
template <typename LO, typename GO, typename GS, typename Node>
Teuchos::RCP<Tpetra::Map<LO,GO,Node> >
epetra_map_to_tpetra_map(const Epetra_BlockMap& map)
{
using Teuchos::as;
using Teuchos::rcp;
int num_my_elements = map.NumMyElements();
Teuchos::Array<int> my_global_elements(num_my_elements);
map.MyGlobalElements(my_global_elements.getRawPtr());
typedef Tpetra::Map<LO,GO,Node> map_t;
RCP<map_t> tmap = rcp(new map_t(Teuchos::OrdinalTraits<GS>::invalid(),
my_global_elements(),
as<GO>(map.IndexBase()),
to_teuchos_comm(Teuchos::rcpFromRef(map.Comm()))));
return tmap;
}
template <typename LO, typename GO, typename GS, typename Node>
Teuchos::RCP<Epetra_Map>
tpetra_map_to_epetra_map(const Tpetra::Map<LO,GO,Node>& map)
{
using Teuchos::as;
Teuchos::Array<GO> elements_tmp;
elements_tmp = map.getNodeElementList();
int num_my_elements = elements_tmp.size();
Teuchos::Array<int> my_global_elements(num_my_elements);
for (int i = 0; i < num_my_elements; ++i){
my_global_elements[i] = as<int>(elements_tmp[i]);
}
using Teuchos::rcp;
RCP<Epetra_Map> emap = rcp(new Epetra_Map(-1,
num_my_elements,
my_global_elements.getRawPtr(),
as<GO>(map.getIndexBase()),
*to_epetra_comm(map.getComm())));
return emap;
}
#endif // HAVE_AMESOS2_EPETRA
#endif // HAVE_TPETRA_INST_INT_INT
template <typename Scalar,
typename GlobalOrdinal,
typename GlobalSizeT>
void transpose(Teuchos::ArrayView<Scalar> vals,
Teuchos::ArrayView<GlobalOrdinal> indices,
Teuchos::ArrayView<GlobalSizeT> ptr,
Teuchos::ArrayView<Scalar> trans_vals,
Teuchos::ArrayView<GlobalOrdinal> trans_indices,
Teuchos::ArrayView<GlobalSizeT> trans_ptr)
{
/* We have a compressed-row storage format of this matrix. We
* transform this into a compressed-column format using a
* distribution-counting sort algorithm, which is described by
* D.E. Knuth in TAOCP Vol 3, 2nd ed pg 78.
*/
#ifdef HAVE_AMESOS2_DEBUG
typename Teuchos::ArrayView<GlobalOrdinal>::iterator ind_it, ind_begin, ind_end;
ind_begin = indices.begin();
ind_end = indices.end();
size_t min_trans_ptr_size = *std::max_element(ind_begin, ind_end) + 1;
TEUCHOS_TEST_FOR_EXCEPTION( Teuchos::as<size_t>(trans_ptr.size()) < min_trans_ptr_size,
std::invalid_argument,
"Transpose pointer size not large enough." );
TEUCHOS_TEST_FOR_EXCEPTION( trans_vals.size() < vals.size(),
std::invalid_argument,
"Transpose values array not large enough." );
TEUCHOS_TEST_FOR_EXCEPTION( trans_indices.size() < indices.size(),
std::invalid_argument,
"Transpose indices array not large enough." );
#else
typename Teuchos::ArrayView<GlobalOrdinal>::iterator ind_it, ind_end;
#endif
// Count the number of entries in each column
Teuchos::Array<GlobalSizeT> count(trans_ptr.size(), 0);
ind_end = indices.end();
for( ind_it = indices.begin(); ind_it != ind_end; ++ind_it ){
++(count[(*ind_it) + 1]);
}
// Accumulate
typename Teuchos::Array<GlobalSizeT>::iterator cnt_it, cnt_end;
cnt_end = count.end();
for( cnt_it = count.begin() + 1; cnt_it != cnt_end; ++cnt_it ){
*cnt_it = *cnt_it + *(cnt_it - 1);
}
// This becomes the array of column pointers
trans_ptr.assign(count);
/* Move the nonzero values into their final place in nzval, based on the
* counts found previously.
*
* This sequence deviates from Knuth's algorithm a bit, following more
* closely the description presented in Gustavson, Fred G. "Two Fast
* Algorithms for Sparse Matrices: Multiplication and Permuted
* Transposition" ACM Trans. Math. Softw. volume 4, number 3, 1978, pages
* 250--269, http://doi.acm.org/10.1145/355791.355796.
*
* The output indices end up in sorted order
*/
GlobalSizeT size = ptr.size();
for( GlobalSizeT i = 0; i < size - 1; ++i ){
GlobalOrdinal u = ptr[i];
GlobalOrdinal v = ptr[i + 1];
for( GlobalOrdinal j = u; j < v; ++j ){
GlobalOrdinal k = count[indices[j]];
trans_vals[k] = vals[j];
trans_indices[k] = i;
++(count[indices[j]]);
}
}
}
template <typename Scalar1, typename Scalar2>
void
scale(Teuchos::ArrayView<Scalar1> vals, size_t l,
size_t ld, Teuchos::ArrayView<Scalar2> s)
{
size_t vals_size = vals.size();
#ifdef HAVE_AMESOS2_DEBUG
size_t s_size = s.size();
TEUCHOS_TEST_FOR_EXCEPTION( s_size < l,
std::invalid_argument,
"Scale vector must have length at least that of the vector" );
#endif
size_t i, s_i;
for( i = 0, s_i = 0; i < vals_size; ++i, ++s_i ){
if( s_i == l ){
// bring i to the next multiple of ld
i += ld - s_i;
s_i = 0;
}
vals[i] *= s[s_i];
}
}
template <typename Scalar1, typename Scalar2, class BinaryOp>
void
scale(Teuchos::ArrayView<Scalar1> vals, size_t l,
size_t ld, Teuchos::ArrayView<Scalar2> s,
BinaryOp binary_op)
{
size_t vals_size = vals.size();
#ifdef HAVE_AMESOS2_DEBUG
size_t s_size = s.size();
TEUCHOS_TEST_FOR_EXCEPTION( s_size < l,
std::invalid_argument,
"Scale vector must have length at least that of the vector" );
#endif
size_t i, s_i;
for( i = 0, s_i = 0; i < vals_size; ++i, ++s_i ){
if( s_i == l ){
// bring i to the next multiple of ld
i += ld - s_i;
s_i = 0;
}
vals[i] = binary_op(vals[i], s[s_i]);
}
}
/** @} */
} // end namespace Util
} // end namespace Amesos2
#endif // #ifndef AMESOS2_UTIL_HPP
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