/usr/include/io_lib/misc.h is in libstaden-read-dev 1.14.9-4.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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* Copyright (c) 2007, 2010, 2013 Genome Research Ltd.
* Author(s): James Bonfield
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
*
* 2. Redistributions in binary form must reproduce the above
* copyright notice, this list of conditions and the following
* disclaimer in the documentation and/or other materials provided
* with the distribution.
*
* 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger
* Institute nor the names of its contributors may be used to endorse
* or promote products derived from this software without specific
* prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS
* IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
* TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
* PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH
* LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
* SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
* LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
* DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
* THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
* (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
* OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*/
/*
* Copyright (c) 1994-1997, 2001-2002 MEDICAL RESEARCH COUNCIL
* All rights reserved
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1 Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
*
* 2 Redistributions in binary form must reproduce the above copyright
* notice, this list of conditions and the following disclaimer in
* the documentation and/or other materials provided with the
* distribution.
*
* 3 Neither the name of the MEDICAL RESEARCH COUNCIL, THE LABORATORY OF
* MOLECULAR BIOLOGY nor the names of its contributors may be used
* to endorse or promote products derived from this software without
* specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
* POSSIBILITY OF SUCH DAMAGE.
*/
#ifndef _misc_h
#define _misc_h
#include "io_lib/os.h"
#include <stdio.h>
#include <stdarg.h> /* varargs needed for v*printf() prototypes */
#include <sys/types.h>
#ifdef __cplusplus
extern "C" {
#endif
/*
* This informs gcc that crash() doesn't return, so it doesn't need to
* concern itself that code paths going via crash could mean some variables
* being undefined and then issuing uninitialised variable warnings.
* This particularly affected convert.
*/
#ifdef __GNUC__
# define __NORETURN__ __attribute__ ((__noreturn__))
#else
# define __NORETURN__
#endif
/*
* Used for printf style argument checking. We can request a function such
* as vTcl_SetResult does argument checking, avoiding bugs with using
* %d and passing in a 64-bit record.
*/
#ifdef __GNUC__
# define __PRINTF_FORMAT__(a,b) __attribute__ ((format (printf, a, b)))
#else
# define __PRINTF_FORMAT__(a,b)
#endif
/*
* Stop gcc from warning about unused variables.
*/
#ifdef __GNUC__
# define __UNUSED__ __attribute__ ((__unused__))
#else
# define __UNUSED__
#endif
/* from files.c */
#ifdef _WIN32
FILE *tmpfile_win(void);
#endif
extern int is_directory(char * fn);
extern int is_file(char * fn);
extern int file_exists(char * fn);
extern int compressed_file_exists(char *fname);
extern int file_size(char * fn);
extern FILE *open_fofn(char *files);
extern char *read_fofn(FILE *fp);
extern void close_fofn(FILE *fp);
extern int fstrlen(char *f, int max_f);
extern void f2cstr(char *f, int max_f, char *c, int max_c);
extern void c2fstr(char *c, int max_c, char *f, int max_f);
extern char *mystrtok(char *s, char *ct);
extern char *myfind(char *file, char* searchpath, int (*found) (char *) );
extern void crash (char* format,...);
extern void str_tolower (char *s);
extern void str_toupper (char *s);
extern char *fn_tail (char *s);
extern void fn_tolower (char *s);
extern void fn_toupper (char *s);
extern void shell_call(char *command, char *output, int len);
extern char *date_str(void);
#ifdef NOSTRDUP
extern char *strdup(const char *s);
#endif
#ifdef NOSTRSTR
extern char *strstr(char *cs, char *ct);
#endif
#ifdef NOMEMMOVE
#define memmove(d,s,l) bcopy(s,d,l)
#endif
extern int myusleep(unsigned int useconds);
extern void errout(char *fmt, ...);
extern void messout(char *fmt, ...);
/*
* Useful macros
*/
#define findfile(F,S) myfind((F),(S),file_exists)
/*is_file fails for symbolic links*/
/*#define findfile(F,S) myfind((F),(S),is_file)*/
#ifdef MIN
#undef MIN
#endif
#define MIN(A,B) ( ( (A) < (B) ) ? (A) : (B) )
#ifdef MAX
#undef MAX
#endif
#define MAX(A,B) ( ( (A) > (B) ) ? (A) : (B) )
#define SGN(A) ( (A) ? ( ( (A) < 0 ) ? -1 : 1 ) : 0 )
#define ABS(A) ( (A) < 0 ? -(A) : (A) )
/* Number of elements in array */
#define Number(A) ( sizeof(A) / sizeof((A)[0]) )
/*
* Things taken from the new gap text_output.h. They'll be used globally
* across all the programs in the end.
*/
/*
* Usage: verror(priority, format, args...);
* NB: don't pass more than 8K per call
*/
#define ERR_WARN 0
#define ERR_FATAL 1
void verror(int priority, char *name, char *fmt, ...);
/*
* Usage: vmessage(format, args...);
* NB: don't pass more than 8K per call
*/
void vmessage(char *fmt, ...);
/*
* Adds a new header to the text output window.
*/
void vfuncheader(char *fmt, ...);
/*
* As vfuncheader, but only outputting when necessary.
*/
void vfuncgroup(int group, char *fmt, ...);
#ifdef __cplusplus
}
#endif
#endif /*_misc_h*/
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