/usr/ is in libsmithwaterman-dev 0.0+20160702-3.
This file is owned by root:root, with mode 0o755.
..
/usr/include/
/usr/include/smithwaterman/
/usr/include/smithwaterman/BandedSmithWaterman.h
/usr/include/smithwaterman/IndelAllele.h
/usr/include/smithwaterman/LeftAlign.h
/usr/include/smithwaterman/Mosaik.h
/usr/include/smithwaterman/Repeats.h
/usr/include/smithwaterman/SmithWatermanGotoh.h
/usr/include/smithwaterman/convert.h
/usr/lib/
/usr/lib/x86_64-linux-gnu/
/usr/lib/x86_64-linux-gnu/libsmithwaterman.a
/usr/lib/x86_64-linux-gnu/pkgconfig/
/usr/lib/x86_64-linux-gnu/pkgconfig/libsmithwaterman.pc
/usr/share/
/usr/share/doc/
/usr/share/doc/libsmithwaterman-dev/
/usr/share/doc/libsmithwaterman-dev/copyright
/usr/lib/x86_64-linux-gnu/libsmithwaterman.so
/usr/share/doc/libsmithwaterman-dev/changelog.Debian.gz