/usr/include/pbseq/pbdata/Enumerations.h is in libpbdata-dev 0~20161219-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 | // Author: Mark Chaisson
#ifndef _BLASR_ENUMERATIONS_HPP_
#define _BLASR_ENUMERATIONS_HPP_
enum class FileType {Fasta,
Fastq,
HDFPulse,
Fourbit,
HDFBase,
HDFCCS,
HDFCCSONLY,
PBBAM,
PBDATASET,
None
};
typedef enum T_Strand {Forward, Reverse} Strand;
typedef enum T_PlatformType {
Astro=1,
Springfield=2,
Sequel=4,
NoPlatform
} PlatformId;
typedef enum T_RegionType {
Adapter,
Insert,
HQRegion,
BarCode,
UnknownRegionType
} RegionType;
typedef enum T_PulseMetricType {
QualityValueMetric,ClassifierQVMetric,StartTimeMetric,PulseWidthMetric,WidthInFramesMetric,
pkmidMetric,IPDMetric,LightMetric, PreBaseFramesMetric
} PulseMetricType;
typedef enum T_AlignMode { NoAlignMode, Fullread, Subread, CCSDeNovo, CCSFullPass, CCSAllPass, ZmwSubreads } AlignMode;
#endif
|