/usr/include/pbbam/internal/ProgramInfo.inl is in libpbbam-dev 0.7.4+ds-1build2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 | // Copyright (c) 2014-2015, Pacific Biosciences of California, Inc.
//
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted (subject to the limitations in the
// disclaimer below) provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// * Redistributions in binary form must reproduce the above
// copyright notice, this list of conditions and the following
// disclaimer in the documentation and/or other materials provided
// with the distribution.
//
// * Neither the name of Pacific Biosciences nor the names of its
// contributors may be used to endorse or promote products derived
// from this software without specific prior written permission.
//
// NO EXPRESS OR IMPLIED LICENSES TO ANY PARTY'S PATENT RIGHTS ARE
// GRANTED BY THIS LICENSE. THIS SOFTWARE IS PROVIDED BY PACIFIC
// BIOSCIENCES AND ITS CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED
// WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
// OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
// DISCLAIMED. IN NO EVENT SHALL PACIFIC BIOSCIENCES OR ITS
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
// SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
// LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
// USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
// ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
// OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
// OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
// SUCH DAMAGE.
//
// File Description
/// \file ProgramInfo.inl
/// \brief Inline implementations for the ProgramInfo class.
//
// Author: Derek Barnett
#include "pbbam/ProgramInfo.h"
namespace PacBio {
namespace BAM {
inline std::string ProgramInfo::CommandLine(void) const
{ return commandLine_; }
inline ProgramInfo& ProgramInfo::CommandLine(const std::string& cmd)
{ commandLine_ = cmd; return *this; }
inline std::map<std::string, std::string> ProgramInfo::CustomTags(void) const
{ return custom_; }
inline ProgramInfo& ProgramInfo::CustomTags(const std::map<std::string,
std::string>& custom)
{ custom_ = custom; return *this; }
inline std::string ProgramInfo::Description(void) const
{ return description_; }
inline ProgramInfo& ProgramInfo::Description(const std::string& description)
{ description_ = description; return *this; }
inline std::string ProgramInfo::Id(void) const
{ return id_; }
inline ProgramInfo& ProgramInfo::Id(const std::string& id)
{ id_ = id; return *this; }
inline bool ProgramInfo::IsValid(void) const
{ return !id_.empty(); }
inline std::string ProgramInfo::Name(void) const
{ return name_; }
inline ProgramInfo& ProgramInfo::Name(const std::string& name)
{ name_ = name; return *this; }
inline std::string ProgramInfo::PreviousProgramId(void) const
{ return previousProgramId_; }
inline ProgramInfo& ProgramInfo::PreviousProgramId(const std::string& id)
{ previousProgramId_ = id; return *this; }
inline std::string ProgramInfo::ToSam(const ProgramInfo& prog)
{ return prog.ToSam(); }
inline std::string ProgramInfo::Version(void) const
{ return version_; }
inline ProgramInfo& ProgramInfo::Version(const std::string& version)
{ version_ = version; return *this; }
} // namespace BAM
} // namespace PacBio
|