/usr/include/pbbam/exception/InvalidSequencingChemistryException.h is in libpbbam-dev 0.7.4+ds-1build2.
This file is owned by root:root, with mode 0o644.
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// File Description
/// \file InvalidSequencingChemistryException.h
/// \brief Defines the InvalidSequencingChemistryException class.
//
// Author: Derek Barnett
#ifndef INVALIDSEQUENCINGCHEMISTRYEXCEPTION_H
#define INVALIDSEQUENCINGCHEMISTRYEXCEPTION_H
#include <exception>
#include <sstream>
#include <string>
namespace PacBio {
namespace BAM {
/// \brief The InvalidSequencingChemistryException class represents an exception
/// that will be thrown when an invalid sequencing chemistry combination
/// is encountered.
///
class InvalidSequencingChemistryException : public std::exception
{
public:
InvalidSequencingChemistryException(const std::string& bindingKit,
const std::string& sequencingKit,
const std::string& basecallerVersion)
: bindingKit_(bindingKit)
, sequencingKit_(sequencingKit)
, basecallerVersion_(basecallerVersion)
{
std::stringstream s;
s << "unsupported sequencing chemistry combination: " << std::endl
<< " binding kit: " << bindingKit_ << std::endl
<< " sequencing kit: " << sequencingKit_ << std::endl
<< " basecaller version: " << basecallerVersion_ << std::endl;
what_ = s.str();
}
// This is a work around for the Intel PHI compiler (icpc)
~InvalidSequencingChemistryException() throw()
{
}
public:
const std::string& BindingKit(void) const
{ return bindingKit_; }
const std::string& SequencingKit(void) const
{ return sequencingKit_; }
const std::string& BasecallerVersion(void) const
{ return basecallerVersion_; }
public:
const char* what(void) const noexcept override
{ return what_.c_str(); }
protected:
std::string bindingKit_;
std::string sequencingKit_;
std::string basecallerVersion_;
std::string what_;
};
} // namespace BAM
} // namespace PacBio
#endif // INVALIDSEQUENCINGCHEMISTRYEXCEPTION_H
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