/usr/include/pbbam/Config.h is in libpbbam-dev 0.7.4+ds-1build2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 | // Copyright (c) 2014-2015, Pacific Biosciences of California, Inc.
//
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted (subject to the limitations in the
// disclaimer below) provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// * Redistributions in binary form must reproduce the above
// copyright notice, this list of conditions and the following
// disclaimer in the documentation and/or other materials provided
// with the distribution.
//
// * Neither the name of Pacific Biosciences nor the names of its
// contributors may be used to endorse or promote products derived
// from this software without specific prior written permission.
//
// NO EXPRESS OR IMPLIED LICENSES TO ANY PARTY'S PATENT RIGHTS ARE
// GRANTED BY THIS LICENSE. THIS SOFTWARE IS PROVIDED BY PACIFIC
// BIOSCIENCES AND ITS CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED
// WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
// OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
// DISCLAIMED. IN NO EVENT SHALL PACIFIC BIOSCIENCES OR ITS
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
// SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
// LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
// USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
// ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
// OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
// OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
// SUCH DAMAGE.
//
// File Description
/// \file Config.h
/// \brief Defines library-wide macros & global variables.
//
// Author: Derek Barnett
#ifndef PBBAM_CONFIG_H
#define PBBAM_CONFIG_H
#include <cstdint>
#ifndef INT8_MAX
#define INT8_MAX 127
#endif
#ifndef INT16_MAX
#define INT16_MAX 32767
#endif
#ifndef INT32_MAX
#define INT32_MAX 2147483647
#endif
#ifndef INT64_MAX
#define INT64_MAX 9223372036854775807LL
#endif
#ifndef INT8_MIN
#define INT8_MIN -128
#endif
#ifndef INT16_MIN
#define INT16_MIN -32768
#endif
#ifndef INT32_MIN
#define INT32_MIN (-INT32_MAX-1)
#endif
#ifndef INT64_MIN
#define INT64_MIN (-INT64_MAX-1)
#endif
#ifndef UINT8_MAX
#define UINT8_MAX 255
#endif
#ifndef UINT16_MAX
#define UINT16_MAX 65535
#endif
#ifndef UINT32_MAX
#define UINT32_MAX 4294967295U
#endif
#ifndef UINT64_MAX
#define UINT64_MAX 18446744073709551615ULL
#endif
/// \name Library Import/Export
/// \{
#ifndef PBBAM_LIBRARY_EXPORT
# if defined(WIN32)
# define PBBAM_LIBRARY_EXPORT __declspec(dllexport)
# else
# define PBBAM_LIBRARY_EXPORT __attribute__((visibility("default")))
# endif
#endif
#ifndef PBBAM_LIBRARY_IMPORT
# if defined(WIN32)
# define PBBAM_LIBRARY_IMPORT __declspec(dllimport)
# else
# define PBBAM_LIBRARY_IMPORT
# endif
#endif
#ifndef PBBAM_EXPORT
# if defined(PBBAM_LIBRARY)
# define PBBAM_EXPORT PBBAM_LIBRARY_EXPORT
# else
# define PBBAM_EXPORT PBBAM_LIBRARY_IMPORT
# endif
#endif
/// \}
/// \name Shared Pointer Settings
/// \{
// uncomment this define, or pass via command-line (-DPBBAM_USE_BOOST_SHARED_PTR),
// to use boost::shared_ptr<T> instead of std::shared_ptr<T>
//
//#define PBBAM_USE_BOOST_SHARED_PTR
#ifdef PBBAM_USE_BOOST_SHARED_PTR
# include <boost/smart_ptr/shared_ptr.hpp>
# define PBBAM_SHARED_PTR boost::shared_ptr
#else
# include <memory>
# define PBBAM_SHARED_PTR std::shared_ptr
#endif
/// \}
/// \name Class Definition Helpers
/// \{
/// \brief Disables the use of copy constructors and assignment operators for a
/// class.
///
/// To use, place the macro in a class's private section:
/// \code{.cpp}
/// struct Foo {
/// private:
/// DISABLE_COPY(Foo);
/// };
/// \endcode
///
#ifndef DISABLE_COPY
#define DISABLE_COPY(Class) \
Class(const Class&); \
Class& operator=(const Class&)
#endif
/// \brief Disables the use of move constructors and assignment operators for a
/// class.
///
/// To use, place the macro in a class's private section:
/// \code{.cpp}
/// struct Foo {
/// private:
/// DISABLE_MOVE(Foo);
/// };
/// \endcode
///
#ifndef DISABLE_MOVE
#define DISABLE_MOVE(Class) \
Class(Class&&); \
Class& operator=(Class&&);
#endif
/// \brief Disables the use of copy & move constructors and assignment operators f
/// or a class.
///
/// To use, place the macro in a class's private section:
/// \code{.cpp}
/// struct Foo {
/// private:
/// DISABLE_MOVE_AND_COPY(Foo);
/// };
/// \endcode
///
#ifndef DISABLE_MOVE_AND_COPY
#define DISABLE_MOVE_AND_COPY(Class) \
DISABLE_MOVE(Class) \
DISABLE_COPY(Class)
#endif
/// \}
// \brief Auto-validation
//
// To validate BAM components (header, records, etc.) you can either use the
// Validator API provided, or enable auto-validation. To compile pbbam for
// auto-validation, add the -DPacBioBAM_auto_validate=ON option to your cmake
// invocation.
//
//
#ifndef PBBAM_AUTOVALIDATE
# define PBBAM_AUTOVALIDATE 0
#endif
/// \}
namespace PacBio {
namespace BAM {
/// \name Verbosity Settings
/// \{
/// \brief Sets the desired verbosity level of htslib warnings.
///
/// Change this value to allow debug/warning statements from htslib itself.
/// The valid range seems to be [0-3], where 0 indicates OFF, and 3 is the
/// most verbose.
///
/// By default, pbbam disables htslib statements to keep output channels clean.
/// We rely on exceptions & their associated messages instead.
///
/// This global variable is obviously not thread-safe by any means. But as a
/// debug flag, it is unlikely to cause any real issues. The worst case would be
/// unexpected presence/absence of output statements.
///
extern int HtslibVerbosity;
/// \}
} // namespace BAM
} // namespace PacBio
#endif // PBBAM_CONFIG_H
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