/usr/include/mia-2.4/mia/3d/vfregularizerkernel.hh is in libmia-2.4-dev 2.4.6-1.
This file is owned by root:root, with mode 0o644.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 | /* -*- mia-c++ -*-
*
* This file is part of MIA - a toolbox for medical image analysis
* Copyright (c) Leipzig, Madrid 1999-2017 Gert Wollny
*
* MIA is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with MIA; if not, see <http://www.gnu.org/licenses/>.
*
*/
#ifndef mia_3d_vfregularizerkernel_hh
#define mia_3d_vfregularizerkernel_hh
#include <mia/core/factory.hh>
#include <mia/3d/vectorfield.hh>
NS_MIA_BEGIN
/**
@ingroup registration
Kernel for iterative 3D vector field regularizer
This is the base class for a 3D vector field reguarlizer
kernels that is typically used in non-linear registration to
evaluate a velocity field from a force field by applying
some regularization model on the input data.
*/
class EXPORT_3D C3DFVectorfieldRegularizerKernel : public CProductBase {
public:
typedef C3DFVectorfieldRegularizerKernel plugin_type;
typedef C3DFVectorfield plugin_data;
class CBuffers {
public:
virtual ~CBuffers();
};
typedef std::unique_ptr<CBuffers> PBuffers;
static const char *type_descr;
typedef std::shared_ptr< C3DFVectorfieldRegularizerKernel > Pointer;
C3DFVectorfieldRegularizerKernel(bool has_pertuberation);
float evaluate_pertuberation_row(unsigned y, unsigned z, CBuffers& buffers) const;
virtual ~C3DFVectorfieldRegularizerKernel();
void set_data_fields(C3DFVectorfield *output, const C3DFVectorfield *input);
void set_update_fields(const T3DDatafield<unsigned char> *update_flags,
T3DDatafield<unsigned char> *set_flags, T3DDatafield<float> *residua,
float residual_thresh);
float evaluate_row(unsigned y, unsigned z, CBuffers& buffers);
float evaluate_row_sparse(unsigned y, unsigned z, CBuffers& buffers);
unsigned get_boundary_padding() const;
PBuffers get_buffers() const;
void start_slice(unsigned z, CBuffers& buffers) const;
bool has_pertuberation() const;
protected:
C3DFVectorfield& get_output_field() const;
const C3DFVectorfield& get_input_field() const;
T3DDatafield<float>& get_residua() const;
const T3DDatafield<unsigned char>& get_update_flags() const;
T3DDatafield<unsigned char>& get_set_flags() const;
float get_residual_thresh() const;
private:
virtual void post_set_data_fields();
virtual float do_evaluate_row(unsigned y, unsigned z, CBuffers& buffers) = 0;
virtual float do_evaluate_row_sparse(unsigned y, unsigned z, CBuffers& buffers) = 0;
virtual unsigned do_get_boundary_padding() const = 0;
virtual PBuffers do_get_buffers() const;
virtual void do_start_slice(unsigned z, CBuffers& buffers) const;
virtual float do_evaluate_pertuberation_row(unsigned y, unsigned z, CBuffers& buffers) const;
C3DFVectorfield *m_output;
const C3DFVectorfield *m_input;
T3DDatafield<float> *m_residua;
const T3DDatafield<unsigned char> *m_update_flags;
T3DDatafield<unsigned char> *m_set_flags;
float m_residual_thresh;
bool m_has_pertuberation;
};
inline
bool C3DFVectorfieldRegularizerKernel::has_pertuberation() const
{
return m_has_pertuberation;
}
inline
C3DFVectorfield& C3DFVectorfieldRegularizerKernel::get_output_field() const
{
return *m_output;
}
inline
const C3DFVectorfield& C3DFVectorfieldRegularizerKernel::get_input_field() const
{
return *m_input;
}
inline
T3DDatafield<float>& C3DFVectorfieldRegularizerKernel::get_residua() const
{
return *m_residua;
}
inline
const T3DDatafield<unsigned char>& C3DFVectorfieldRegularizerKernel::get_update_flags() const
{
return *m_update_flags;
}
inline
T3DDatafield<unsigned char>& C3DFVectorfieldRegularizerKernel::get_set_flags() const
{
return *m_set_flags;
}
inline
float C3DFVectorfieldRegularizerKernel::get_residual_thresh() const
{
return m_residual_thresh;
}
typedef C3DFVectorfieldRegularizerKernel::Pointer P3DVectorfieldRegularizerKernel;
typedef TFactory<C3DFVectorfieldRegularizerKernel> C3DFVectorfieldRegularizerKernelPlugin;
typedef THandlerSingleton<TFactoryPluginHandler<C3DFVectorfieldRegularizerKernelPlugin> > C3DFVectorfieldRegularizerKernelPluginHandler;
template <> const char * const TPluginHandler<C3DFVectorfieldRegularizerKernelPlugin>::m_help;
extern template class EXPORT_3D TFactory<C3DFVectorfieldRegularizerKernel>;
extern template class EXPORT_3D TFactoryPluginHandler<C3DFVectorfieldRegularizerKernelPlugin>;
extern template class EXPORT_3D THandlerSingleton<TFactoryPluginHandler<C3DFVectorfieldRegularizerKernelPlugin> >;
/**
@cond NEVER
@ingroup traits
@brief Trait to make C3DFVectorfieldRegularizerPluginHandler available for creation by command line parsing
*/
FACTORY_TRAIT(C3DFVectorfieldRegularizerKernelPluginHandler);
/// @endcond
NS_MIA_END
#endif
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