This file is indexed.

/usr/include/liggghts/my_page.h is in libliggghts-dev 3.7.0+repack1-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
/* ----------------------------------------------------------------------
    This is the

    ██╗     ██╗ ██████╗  ██████╗  ██████╗ ██╗  ██╗████████╗███████╗
    ██║     ██║██╔════╝ ██╔════╝ ██╔════╝ ██║  ██║╚══██╔══╝██╔════╝
    ██║     ██║██║  ███╗██║  ███╗██║  ███╗███████║   ██║   ███████╗
    ██║     ██║██║   ██║██║   ██║██║   ██║██╔══██║   ██║   ╚════██║
    ███████╗██║╚██████╔╝╚██████╔╝╚██████╔╝██║  ██║   ██║   ███████║
    ╚══════╝╚═╝ ╚═════╝  ╚═════╝  ╚═════╝ ╚═╝  ╚═╝   ╚═╝   ╚══════╝®

    DEM simulation engine, released by
    DCS Computing Gmbh, Linz, Austria
    http://www.dcs-computing.com, office@dcs-computing.com

    LIGGGHTS® is part of CFDEM®project:
    http://www.liggghts.com | http://www.cfdem.com

    Core developer and main author:
    Christoph Kloss, christoph.kloss@dcs-computing.com

    LIGGGHTS® is open-source, distributed under the terms of the GNU Public
    License, version 2 or later. It is distributed in the hope that it will
    be useful, but WITHOUT ANY WARRANTY; without even the implied warranty
    of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. You should have
    received a copy of the GNU General Public License along with LIGGGHTS®.
    If not, see http://www.gnu.org/licenses . See also top-level README
    and LICENSE files.

    LIGGGHTS® and CFDEM® are registered trade marks of DCS Computing GmbH,
    the producer of the LIGGGHTS® software and the CFDEM®coupling software
    See http://www.cfdem.com/terms-trademark-policy for details.

-------------------------------------------------------------------------
    Contributing author and copyright for this file:
    This file is from LAMMPS
    LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
    http://lammps.sandia.gov, Sandia National Laboratories
    Steve Plimpton, sjplimp@sandia.gov

    Copyright (2003) Sandia Corporation.  Under the terms of Contract
    DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
    certain rights in this software.  This software is distributed under
    the GNU General Public License.
------------------------------------------------------------------------- */

/* ----------------------------------------------------------------------
MyPage = templated class for storing chunks of datums in pages
  chunks are not returnable, can only reset and start over
  replaces many small mallocs with a few large mallocs
  pages are never freed, so can reuse w/out reallocs
usage:
  request one datum at a time, repeat, clear
  request chunks of datums in each get() or vget(), repeat, clear
  chunk size can vary from request to request
  chunk size can be known in advance or registered after usage via vgot()
inputs:
   template T = one datum, e.g. int, double, struct, int[3]
     for int[3], access datum as ivec[i][2]
methods:
   T *get() = return ptr to one datum
   T *get(N) = return ptr to N datums, N < maxchunk required
   T *vget() = return ptr to maxchunk datums, use as needed, then call vgot()
     all gets return NULL if error encountered
   vgot(N) = used N datums of previous vget(), N < maxchunk required
   void init(maxchunk, pagesize, pagedelta)
     define allocation params and allocate first page(s)
     call right after constructor
       can call again to reset allocation params and free previous pages
     maxchunk = max # of datums in one chunk, default = 1
     pagesize = # of datums in one page, default = 1024
       should be big enough to store multiple chunks
     pagedelta = # of pages to allocate at a time, default = 1
     return 1 if bad params
   void reset() = clear pages w/out freeing
   int size() = return total size of allocated pages in bytes
   int status() = return error status
     0 = ok, 1 = chunksize > maxchunk, 2 = allocation error
------------------------------------------------------------------------- */

#ifndef LAMMPS_MY_PAGE_H
#define LAMMPS_MY_PAGE_H

#include <stdlib.h>
namespace LAMMPS_NS {

template<class T>
class MyPage {
  int ndatum;      // total # of stored datums
  int nchunk;      // total # of stored chunks

 public:
  MyPage() {
    ndatum = nchunk = 0;
    pages = NULL;
    npage = 0;
    errorflag = 0;
    zeroize = false; 
  }

  // (re)initialize allocation params
  // also allocate first page(s)

  int init(int user_maxchunk = 1, int user_pagesize = 1024,
           int user_pagedelta = 1) {
    maxchunk = user_maxchunk;
    pagesize = user_pagesize;
    pagedelta = user_pagedelta;

    if (maxchunk <= 0 || pagesize <= 0 || pagedelta <= 0) return 1;
    if (maxchunk > pagesize) return 1;

    // free any previously allocated pages

    for (int i = 0; i < npage; i++) free(pages[i]);
    free(pages);

    // initial page allocation

    ndatum = nchunk = 0;
    pages = NULL;
    npage = 0;
    allocate();
    if (errorflag) return 2;
    ipage = index = 0;
    page = pages[ipage];
    return 0;
  }

  // free all allocated pages

  ~MyPage() {
    for (int i = 0; i < npage; i++) free(pages[i]);
    free(pages);
  }

  // get ptr to one datum
  // return NULL if run out of memory

  T *get() {
    ndatum++;
    nchunk++;
    if (index < pagesize) return &page[index++];
    ipage++;
    if (ipage == npage) {
      allocate();
      if (errorflag) return NULL;
    }
    page = pages[ipage];
    index = 0;
    return &page[index++];
  }

  // get ptr to location that can store N datums
  // error if N > maxchunk
  // return NULL if run out of memory

  T *get(int n) {
    if (n > maxchunk) {
      errorflag = 1;
      return NULL;
    }
    ndatum += n;
    nchunk++;
    if (index+n <= pagesize) {
      int start = index;
      index += n;
      return &page[start];
    }
    ipage++;
    if (ipage == npage) {
      allocate();
      if (errorflag) return NULL;
    }
    page = pages[ipage];
    index = n;
    return &page[0];
  }

  // get ptr to location that can store maxchunk datums
  // will return same ptr as previous call if vgot() not called
  // return NULL if run out of memory

  T *vget() {
    if (index+maxchunk <= pagesize) return &page[index];
    ipage++;
    if (ipage == npage) {
      allocate();
      if (errorflag) return NULL;
    }
    page = pages[ipage];
    index = 0;
    return &page[index];
  }

  // increment by N = # of values stored in loc returned by vget()
  // OK to not call if vget() ptr was not used
  // error if N > maxchunk

  void vgot(int n) {
    if (n > maxchunk) errorflag = 1;
    ndatum += n;
    nchunk++;
    index += n;
  }

  // clear all pages, without freeing any memory

  void reset() {
    ndatum = nchunk = 0;
    index = ipage = 0;
    page = pages[ipage];
  }

  // clear all pages, zeroize allocated memory and
  // ensure that all future pages are initialized with zero

  void reset(bool zeroize_pages) { 
    ndatum = nchunk = 0;
    index = ipage = 0;
    page = pages[ipage];
    zeroize = zeroize_pages;

    if(zeroize) {
      for(int i=0; i < npage; i++) {
        memset(pages[i], 0, pagesize*sizeof(T));
      }
    }
  }

  // return total size of allocated pages

  int size() const {
    return npage*pagesize*sizeof(T);
  }

  // return error status

  int status() const {
    return errorflag;
  }

 private:
  T **pages;      // list of allocated pages
  T *page;        // ptr to current page
  int npage;      // # of allocated pages
  int ipage;      // index of current page
  int index;      // current index on current page

  int maxchunk;   // max # of datums in one requested chunk
  int pagesize;   // # of datums in one page, default = 1024
  int pagedelta;  // # of pages to allocate at once, default = 1

  int errorflag;  // flag > 0 if error has occurred
                  // 1 = chunk size exceeded maxchunk
                  // 2 = memory allocation error

  bool zeroize;   // new pages allocated are initialized with zero 

  void allocate() {
    npage += pagedelta;
    pages = (T **) realloc(pages,npage*sizeof(T *));
    if (!pages) {
      errorflag = 2;
      return;
    }

    for (int i = npage-pagedelta; i < npage; i++) {
#if defined(LAMMPS_MEMALIGN)
      void *ptr;
      if (posix_memalign(&ptr, LAMMPS_MEMALIGN, pagesize*sizeof(T)))
        errorflag = 2;
      pages[i] = (T *) ptr;
#else
      if(zeroize) 
        pages[i] = (T *) calloc(pagesize,sizeof(T));
      else
        pages[i] = (T *) malloc(pagesize*sizeof(T));
      if (!pages[i]) errorflag = 2;

#endif
    }
  }
};

}

#endif