/usr/include/jellyfish/mer_dna_bloom_counter.hpp is in libjellyfish-2.0-dev 2.2.8-3build1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 | /* This file is part of Jellyfish.
Jellyfish is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
Jellyfish is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with Jellyfish. If not, see <http://www.gnu.org/licenses/>.
*/
#ifndef __JELLYFISH_MER_DNA_BLOOM_COUNTER_HPP_
#define __JELLYFISH_MER_DNA_BLOOM_COUNTER_HPP_
#include <jellyfish/mer_dna.hpp>
#include <jellyfish/bloom_counter2.hpp>
#include <jellyfish/bloom_filter.hpp>
#include <jellyfish/rectangular_binary_matrix.hpp>
#include <jellyfish/misc.hpp>
namespace jellyfish {
template<>
struct hash_pair<mer_dna> {
RectangularBinaryMatrix m1, m2;
hash_pair() : m1(8 * sizeof(uint64_t), mer_dna::k() * 2), m2(8 * sizeof(uint64_t), mer_dna::k() * 2) {
m1.randomize(random_bits);
m2.randomize(random_bits);
}
hash_pair(RectangularBinaryMatrix&& m1_, RectangularBinaryMatrix&& m2_) : m1(m1_), m2(m2_) { }
void operator()(const mer_dna& k, uint64_t* hashes) const {
hashes[0] = m1.times(k);
hashes[1] = m2.times(k);
}
};
typedef bloom_counter2<mer_dna> mer_dna_bloom_counter;
typedef bloom_counter2_file<mer_dna> mer_dna_bloom_counter_file;
typedef bloom_filter<mer_dna> mer_dna_bloom_filter;
typedef bloom_filter_file<mer_dna> mer_dna_bloom_filter_file;
}
#endif /* __JELLYFISH_MER_DNA_BLOOM_COUNTER_HPP_ */
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