/usr/include/jellyfish/jellyfish.hpp is in libjellyfish-2.0-dev 2.2.8-3build1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 | /* This file is part of Jellyfish.
Jellyfish is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
Jellyfish is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with Jellyfish. If not, see <http://www.gnu.org/licenses/>.
*/
#ifndef __JELLYFISH_JELLYFISH_HPP__
#define __JELLYFISH_JELLYFISH_HPP__
#include <stdint.h>
#include <jellyfish/mer_dna.hpp>
#include <jellyfish/hash_counter.hpp>
#include <jellyfish/text_dumper.hpp>
#include <jellyfish/binary_dumper.hpp>
typedef jellyfish::cooperative::hash_counter<jellyfish::mer_dna> mer_hash;
typedef mer_hash::array mer_array;
typedef jellyfish::text_dumper<mer_array> text_dumper;
typedef jellyfish::text_reader<jellyfish::mer_dna, uint64_t> text_reader;
typedef jellyfish::binary_dumper<mer_array> binary_dumper;
typedef jellyfish::binary_reader<jellyfish::mer_dna, uint64_t> binary_reader;
typedef jellyfish::binary_query_base<jellyfish::mer_dna, uint64_t> binary_query;
typedef jellyfish::binary_writer<jellyfish::mer_dna, uint64_t> binary_writer;
typedef jellyfish::text_writer<jellyfish::mer_dna, uint64_t> text_writer;
#endif /* __JELLYFISH_JELLYFISH_HPP__ */
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