/usr/include/genometools/genometools.h is in libgenometools0-dev 1.5.10+ds-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 | /*
Copyright (c) 2003-2013 Gordon Gremme <gordon@gremme.org>
Copyright (c) 2003-2008 Center for Bioinformatics, University of Hamburg
Permission to use, copy, modify, and distribute this software for any
purpose with or without fee is hereby granted, provided that the above
copyright notice and this permission notice appear in all copies.
THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES
WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF
MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR
ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES
WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN
ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF
OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.
*/
#ifndef GENOMETOOLS_H
#define GENOMETOOLS_H
/* The GenomeTools ``all-in-one'' header.
Include only this header if you program against the libgenometools. */
/* the generated config header (includes version information) */
#include "gt_config.h"
#ifdef __cplusplus
extern "C" {
#endif
/* the core module */
#include "core/alphabet_api.h"
#include "core/array2dim_api.h"
#include "core/array_api.h"
#include "core/assert_api.h"
#include "core/basename_api.h"
#include "core/bittab_api.h"
#include "core/bsearch_api.h"
#include "core/codon_api.h"
#include "core/codon_iterator_api.h"
#include "core/codon_iterator_encseq_api.h"
#include "core/codon_iterator_simple_api.h"
#include "core/countingsort_api.h"
#include "core/cstr_api.h"
#include "core/cstr_table_api.h"
#include "core/disc_distri_api.h"
#include "core/dlist_api.h"
#include "core/encseq_api.h"
#include "core/endianess_api.h"
#include "core/error_api.h"
#include "core/fasta_api.h"
#include "core/file_api.h"
#include "core/fileutils_api.h"
#include "core/fptr_api.h"
#include "core/grep_api.h"
#include "core/hashmap_api.h"
#include "core/init_api.h"
#include "core/interval_tree_api.h"
#include "core/log_api.h"
#include "core/logger_api.h"
#include "core/ma_api.h"
#include "core/md5_encoder_api.h"
#include "core/md5_fingerprint_api.h"
#include "core/msort_api.h"
#include "core/multithread_api.h"
#include "core/option_api.h"
#include "core/output_file_api.h"
#include "core/parseutils_api.h"
#include "core/phase_api.h"
#include "core/qsort_r_api.h"
#include "core/queue_api.h"
#include "core/range_api.h"
#include "core/readmode_api.h"
#include "core/seq_iterator_api.h"
#include "core/seq_iterator_fastq_api.h"
#include "core/seq_iterator_sequence_buffer_api.h"
#include "core/splitter_api.h"
#include "core/str_api.h"
#include "core/str_array_api.h"
#include "core/strand_api.h"
#include "core/strcmp_api.h"
#include "core/symbol_api.h"
#include "core/thread_api.h"
#include "core/timer_api.h"
#include "core/tool_api.h"
#include "core/toolbox_api.h"
#include "core/translator_api.h"
#include "core/trans_table_api.h"
#include "core/types_api.h"
#include "core/undef_api.h"
#include "core/unused_api.h"
#include "core/version_api.h"
#include "core/warning_api.h"
#include "core/xansi_api.h"
/* the extended module */
#include "extended/add_introns_stream_api.h"
#include "extended/anno_db_gfflike_api.h"
#include "extended/anno_db_schema_api.h"
#include "extended/array_in_stream_api.h"
#include "extended/array_out_stream_api.h"
#include "extended/bed_in_stream_api.h"
#include "extended/comment_node_api.h"
#include "extended/csa_stream_api.h"
#include "extended/cds_stream_api.h"
#include "extended/eof_node_api.h"
#include "extended/extract_feature_stream_api.h"
#include "extended/feature_index_api.h"
#include "extended/feature_index_memory_api.h"
#include "extended/feature_in_stream_api.h"
#include "extended/feature_node_api.h"
#include "extended/feature_node_iterator_api.h"
#include "extended/feature_out_stream_api.h"
#include "extended/feature_stream_api.h"
#include "extended/genome_node_api.h"
#include "extended/gff3_in_stream_api.h"
#include "extended/gff3_out_stream_api.h"
#include "extended/gff3_parser_api.h"
#include "extended/gff3_visitor_api.h"
#include "extended/gtf_in_stream_api.h"
#include "extended/id_to_md5_stream_api.h"
#include "extended/inter_feature_stream_api.h"
#include "extended/match_api.h"
#include "extended/match_blast_api.h"
#include "extended/match_iterator_api.h"
#include "extended/match_open_api.h"
#include "extended/match_sw_api.h"
#include "extended/match_visitor_api.h"
#include "extended/md5_to_id_stream_api.h"
#include "extended/merge_feature_stream_api.h"
#include "extended/merge_stream_api.h"
#include "extended/meta_node_api.h"
#include "extended/node_stream_api.h"
#include "extended/node_visitor_api.h"
#include "extended/orf_iterator_api.h"
#include "extended/rdb_api.h"
#include "extended/rdb_sqlite_api.h"
#ifdef HAVE_MYSQL
#include "extended/rdb_mysql_api.h"
#endif
#include "extended/rdb_visitor_api.h"
#include "extended/region_mapping_api.h"
#include "extended/region_node_api.h"
#include "extended/reverse_api.h"
#include "extended/script_filter_api.h"
#include "extended/select_stream_api.h"
#include "extended/sequence_node_api.h"
#include "extended/set_source_visitor_api.h"
#include "extended/sort_stream_api.h"
#include "extended/stat_stream_api.h"
#include "extended/tag_value_map_api.h"
#include "extended/type_checker_api.h"
#include "extended/type_checker_obo_api.h"
#include "extended/uniq_stream_api.h"
#include "extended/visitor_stream_api.h"
/* the LTR module */
#include "ltr/ltr_classify_stream_api.h"
#include "ltr/ltr_cluster_stream_api.h"
#include "ltr/ltr_orf_annotator_stream_api.h"
#include "ltr/ltr_refseq_match_stream_api.h"
#ifndef WITHOUT_CAIRO
/* the AnnotationSketch module (depends on Cairo) */
#include "annotationsketch/block_api.h"
#include "annotationsketch/canvas_api.h"
#include "annotationsketch/canvas_cairo_context_api.h"
#include "annotationsketch/canvas_cairo_file_api.h"
#include "annotationsketch/color_api.h"
#include "annotationsketch/custom_track_api.h"
#include "annotationsketch/custom_track_gc_content_api.h"
#include "annotationsketch/custom_track_script_wrapper_api.h"
#include "annotationsketch/diagram_api.h"
#include "annotationsketch/graphics_api.h"
#include "annotationsketch/image_info_api.h"
#include "annotationsketch/layout_api.h"
#include "annotationsketch/rec_map_api.h"
#include "annotationsketch/style_api.h"
#include "annotationsketch/text_width_calculator_api.h"
#include "annotationsketch/text_width_calculator_cairo_api.h"
#endif
#ifdef __cplusplus
}
#endif
#endif
|