This file is indexed.

/usr/include/dcmtk/dcmsr/dsrscovl.h is in libdcmtk-dev 3.6.2-3build3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
/*
 *
 *  Copyright (C) 2000-2016, OFFIS e.V.
 *  All rights reserved.  See COPYRIGHT file for details.
 *
 *  This software and supporting documentation were developed by
 *
 *    OFFIS e.V.
 *    R&D Division Health
 *    Escherweg 2
 *    D-26121 Oldenburg, Germany
 *
 *
 *  Module: dcmsr
 *
 *  Author: Joerg Riesmeier
 *
 *  Purpose:
 *    classes: DSRSpatialCoordinatesValue
 *
 */


#ifndef DSRSCOVL_H
#define DSRSCOVL_H

#include "dcmtk/config/osconfig.h"   /* make sure OS specific configuration is included first */

#include "dcmtk/dcmsr/dsrtypes.h"
#include "dcmtk/dcmsr/dsrscogr.h"


/*---------------------*
 *  class declaration  *
 *---------------------*/

/** Class for spatial coordinate values
 */
class DCMTK_DCMSR_EXPORT DSRSpatialCoordinatesValue
{
    // allow access to getValuePtr()
    friend class DSRContentItem;

  public:

    /** default constructor
     */
    DSRSpatialCoordinatesValue();

    /** constructor
     ** @param  graphicType  graphic type specifying the geometry of the coordinates
     */
    DSRSpatialCoordinatesValue(const DSRTypes::E_GraphicType graphicType);

    /** copy constructor
     ** @param  coordinatesValue  spatial coordinates value to be copied (not checked !)
     */
    DSRSpatialCoordinatesValue(const DSRSpatialCoordinatesValue &coordinatesValue);

    /** destructor
     */
    virtual ~DSRSpatialCoordinatesValue();

    /** assignment operator
     ** @param  coordinatesValue  spatial coordinates value to be copied (not checked !)
     ** @return reference to this spatial coordinates value after 'coordinatesValue' has
     *          been copied
     */
    DSRSpatialCoordinatesValue &operator=(const DSRSpatialCoordinatesValue &coordinatesValue);

    /** clear all internal variables.
     *  Graphic type is set to DSRTypes::GT_invalid.  Since an empty list of graphic data is
     *  invalid the spatial coordinates value becomes invalid afterwards.
     */
    virtual void clear();

    /** check whether the current spatial coordinates value is valid.
     *  The value is valid if the graphic type is not DSRTypes::GT_invalid and the graphic data
     *  is valid.  See checkGraphicData() method for details.
     ** @return OFTrue if reference value is valid, OFFalse otherwise
     */
    virtual OFBool isValid() const;

    /** check whether the content is short.
     *  This method is used to check whether the rendered output of this content item can be
     *  expanded inline or not (used for renderHTML()).
     ** @param  flags  flag used to customize the output (see DSRTypes::HF_xxx)
     ** @return OFTrue if the content is short, OFFalse otherwise
     */
    virtual OFBool isShort(const size_t flags) const;

    /** print spatial coordinates.
     *  The output of a typical spatial coordinates value looks like this: (CIRCLE,0/0,255/255).
     ** @param  stream  output stream to which the spatial coordinates value should be printed
     *  @param  flags   flag used to customize the output (see DSRTypes::PF_xxx)
     ** @return status, EC_Normal if successful, an error code otherwise
     */
    virtual OFCondition print(STD_NAMESPACE ostream &stream,
                              const size_t flags) const;

    /** read spatial coordinates value from dataset
     ** @param  dataset  DICOM dataset from which the value should be read
     *  @param  flags    flag used to customize the reading process (see DSRTypes::RF_xxx)
     ** @return status, EC_Normal if successful, an error code otherwise
     */
    virtual OFCondition read(DcmItem &dataset,
                             const size_t flags);

    /** write spatial coordinates reference value to dataset
     ** @param  dataset  DICOM dataset to which the value should be written
     ** @return status, EC_Normal if successful, an error code otherwise
     */
    virtual OFCondition write(DcmItem &dataset) const;

    /** read spatial coordinates value from XML document
     ** @param  doc     document containing the XML file content
     *  @param  cursor  cursor pointing to the starting node
     *  @param  flags   flag used to customize the reading process (see DSRTypes::XF_xxx)
     ** @return status, EC_Normal if successful, an error code otherwise
     */
    virtual OFCondition readXML(const DSRXMLDocument &doc,
                                DSRXMLCursor cursor,
                                const size_t flags);

    /** write spatial coordinates value in XML format
     ** @param  stream  output stream to which the XML document is written
     *  @param  flags   flag used to customize the output (see DSRTypes::XF_xxx)
     ** @return status, EC_Normal if successful, an error code otherwise
     */
    virtual OFCondition writeXML(STD_NAMESPACE ostream &stream,
                                 const size_t flags) const;

    /** render spatial coordinates value in HTML/XHTML format
     ** @param  docStream    output stream to which the main HTML/XHTML document is written
     *  @param  annexStream  output stream to which the HTML/XHTML document annex is written
     *  @param  annexNumber  reference to the variable where the current annex number is
     *                       stored.  Value is increased automatically by 1 after a new entry
     *                       has been added.
     *  @param  flags        flag used to customize the output (see DSRTypes::HF_xxx)
     ** @return status, EC_Normal if successful, an error code otherwise
     */
    virtual OFCondition renderHTML(STD_NAMESPACE ostream &docStream,
                                   STD_NAMESPACE ostream &annexStream,
                                   size_t &annexNumber,
                                   const size_t flags) const;

    /** get copy of spatial coordinates value
     ** @param  coordinatesValue  reference to variable in which the value should be stored
     ** @return status, EC_Normal if successful, an error code otherwise
     */
    OFCondition getValue(DSRSpatialCoordinatesValue &coordinatesValue) const;

    /** get reference to spatial coordinates value
     ** @return reference to spatial coordinates value
     */
    inline const DSRSpatialCoordinatesValue &getValue() const
    {
        return *this;
    }

    /** get current graphic type.
     *  The graphic type specifies the geometry of the coordinates stored in the graphic data
     *  list.
     ** @return graphic type (might be DSRTypes::GT_invalid)
     */
    inline DSRTypes::E_GraphicType getGraphicType() const
    {
        return GraphicType;
    }

    /** get reference to graphic data list.
     *  This list contains an ordered set of (columns,rows) pairs that denote positions in an
     *  image.  The allowed number of pairs is depending on the graphic type.
     ** @return reference to graphic data list
     */
    inline DSRGraphicDataList &getGraphicDataList()
    {
        return GraphicDataList;
    }

    /** get fiducial UID.
     *  Optional - This is the globally unique identifier for this fiducial item.  It can be
     *  used to associate these spatial coordinates with other content items.
     ** @return fiducial UID (might be invalid or an empty string)
     */
    inline const OFString &getFiducialUID() const
    {
        return FiducialUID;
    }

    /** set spatial coordinates value.
     *  Before setting the value, the graphic type and data are usually checked.  If the value
     *  is invalid, the current value is not replaced and remains unchanged.
     ** @param  coordinatesValue  value to be set
     *  @param  check             if enabled, check values for validity before setting them.
     *                            See checkXXX() methods for details.  Empty values are only
     *                            accepted for non-mandatory attributes.
     ** @return status, EC_Normal if successful, an error code otherwise
     */
    OFCondition setValue(const DSRSpatialCoordinatesValue &coordinatesValue,
                         const OFBool check = OFTrue);

    /** set current graphic type.
     *  The graphic type specifies the geometry of the coordinates stored in the graphic data
     *  list.
     ** @param  graphicType  graphic type to be set (DSRTypes::GT_invalid is not allowed)
     *  @param  check        dummy parameter (currently not used)
     ** @return status, EC_Normal if successful, an error code otherwise
     */
    OFCondition setGraphicType(const DSRTypes::E_GraphicType graphicType,
                               const OFBool check = OFTrue);

    /** set current fiducial UID.
     *  Globally unique identifier that can be used to associate these spatial coordinates
     *  with other content items.
     ** @param  fiducialUID  value to be set (VR=UI, optional)
     *  @param  check        if enabled, check value for validity before setting it.  See
     *                       checkFiducialUID() method for details.
     ** @return status, EC_Normal if successful, an error code otherwise
     */
    OFCondition setFiducialUID(const OFString &fiducialUID,
                               const OFBool check = OFTrue);


  protected:

    /** get pointer to spatial coordinates value
     ** @return pointer to spatial coordinates value (never NULL)
     */
    inline DSRSpatialCoordinatesValue *getValuePtr()
    {
        return this;
    }

    /** check the specified graphic type and data for validity.
     *  If 'graphicType' is valid, the number of entries in the 'graphicDatalist' are checked.
     *  A POINT needs exactly 1 value pair (column,row), a MULTIPOINT at least 1?, a POLYLINE
     *  at least 1?, a CIRCLE exactly 2 and an ELLIPSE exactly 4.
     ** @param  graphicType      graphic type to be checked
     *  @param  graphicDataList  list of graphic data to be checked
     *  @param  reportWarnings   if enabled, report a warning message on each deviation from
     *                           an expected value to the logger
     ** @return status, EC_Normal if graphic type and data are valid, an error code otherwise
     */
    OFCondition checkGraphicData(const DSRTypes::E_GraphicType graphicType,
                                 const DSRGraphicDataList &graphicDataList,
                                 const OFBool reportWarnings = OFFalse) const;

    /** check the specified fiducial UID for validity
     ** @param  fiducialUID  fiducial UID to be checked
     ** @return status, EC_Normal if fiducial UID is valid, an error code otherwise
     */
    OFCondition checkFiducialUID(const OFString &fiducialUID) const;


  private:

    /// Graphic Type (associated DICOM VR=CS, type 1)
    DSRTypes::E_GraphicType GraphicType;
    /// Graphic Data (associated DICOM VR=FL, VM=2-n, type 1)
    DSRGraphicDataList      GraphicDataList;
    /// Fiducial UID (VR=UI, VM=1, type 3)
    OFString                FiducialUID;
    /// Pixel Origin Interpretation (VR=CS, VM=1, type 1C)
     // - tbd: conditional attribute not yet supported
};


#endif