This file is indexed.

/usr/include/dcmtk/dcmiod/iodutil.h is in libdcmtk-dev 3.6.2-3build3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
/*
 *
 *  Copyright (C) 2015-2017, Open Connections GmbH
 *  All rights reserved.  See COPYRIGHT file for details.
 *
 *  This software and supporting documentation are maintained by
 *
 *    OFFIS e.V.
 *    R&D Division Health
 *    Escherweg 2
 *    D-26121 Oldenburg, Germany
 *
 *
 *  Module: dcmiod
 *
 *  Author: Michael Onken
 *
 *  Purpose: Static helper functionality for dcmiod module
 *
 */

#ifndef IODUTIL_H
#define IODUTIL_H

#include "dcmtk/config/osconfig.h"
#include "dcmtk/ofstd/oftraits.h" // for OFremove_pointer
#include "dcmtk/ofstd/ofstring.h"
#include "dcmtk/dcmdata/dcelem.h"
#include "dcmtk/dcmdata/dcsequen.h"
#include "dcmtk/dcmdata/dcdatset.h"
#include "dcmtk/dcmdata/dcdatutl.h"
#include "dcmtk/ofstd/ofdate.h"
#include "dcmtk/ofstd/oftime.h"
#include "dcmtk/dcmiod/ioddef.h"
#include "dcmtk/dcmiod/iodrules.h"
#include "dcmtk/dcmiod/iodtypes.h"

/** Class with helper functions used within the dcmiod module (and beyond)
 */
class DCMTK_DCMIOD_EXPORT DcmIODUtil
{

public:

  /** Get element from dataset and check it for correct value multiplicity
   *  and type.
   *  @param  dataset DICOM dataset from which the element should be retrieved.
   *          (Would be 'const' if the methods from 'dcmdata' would also
   *          (be 'const'.)
   *  @param  delem  DICOM element used to store the value (always creates
   *          a copy of the dataset element's value)
   *  @param  vm Value multiplicity (according to the data dictionary) to be
   *          checked for. (See DcmElement::checkVM() for a list of valid
   *          values.) Interpreted as cardinality (number of items) for
   *          sequence attributes.
   *  @param  type Value type (valid value: "1", "1C", "2", something else
   *          which is not checked)
   *  @param  moduleName Optional module name to be printed (NULL: no module
   *          printed at all)
   *  @return EC_Normal if element could be retrieved and value is correct,
   *          an error code otherwise
   */
  static OFCondition getAndCheckElementFromDataset(DcmItem &dataset,
                                                   DcmElement &delem,
                                                   const OFString &vm,
                                                   const OFString &type,
                                                   const char *moduleName = NULL);

  /** Get element from dataset and check it for correct value multiplicity and
   *  type.
   *  @param  dataset DICOM dataset from which the element should be retrieved.
   *          (Would be 'const' if the methods from 'dcmdata' would also
   *          be 'const')
   *  @param  tagKey Tag key of the element to get
   *  @param  delem DICOM element that is set to a copy of the dataset's
   *          orinal element
   *  @param  vm Value multiplicity (according to the data dictionary) to be
   *          checked for. (See DcmElement::checkVM() for a list of valid
   *          values.) Interpreted as cardinality (number of items) for
   *          sequence attributes.
   *  @param  type Value type (valid value: "1", "1C", "2", something else
   *          which is not checked)
   *  @param  moduleName Optional module name to be printed (NULL: no module
   *          printed at all)
   *  @return EC_Normal if element could be retrieved and value is correct, an
   *          error code otherwise
   */
  static OFCondition getAndCheckElementFromDataset(DcmItem &dataset,
                                                   const DcmTagKey& tagKey,
                                                   DcmElement*& delem,
                                                   const OFString &vm,
                                                   const OFString &type,
                                                   const char *moduleName = NULL);

  /** Get element from dataset and check it for correct value multiplicity
   *  and type.
   *  @param  dataset DICOM dataset from which the element should be retrieved.
   *          (Would be 'const' if the methods from 'dcmdata' would also
   *          be 'const'.)
   *  @param  delem DICOM element used to store the value (always creates
   *          a copy of the value from the original element)
   *  @param  rule  Rule describing parameters to be checked on element
   *  @return EC_Normal if element could be retrieved and value is correct, an
   *          error code otherwise
   */
  static OFCondition getAndCheckElementFromDataset(DcmItem &dataset,
                                                   DcmElement &delem,
                                                   const IODRule* rule);

  /** Get element from dataset and check it for correct value multiplicity
   *  and type.
   *  @param  dataset DICOM dataset from which the element should be retrieved.
   *          (Would be 'const' if the methods from 'dcmdata' would also
   *          be 'const')
   *  @param  delem DICOM element that is set to a copy of the dataset's
   *          orinal element
   *  @param  rule  Rule describing parameters to be checked on element.
   *  @return EC_Normal if element could be retrieved and value is correct, an
   *          error code otherwise
   */
  static OFCondition getAndCheckElementFromDataset(DcmItem &dataset,
                                                   DcmElement*& delem,
                                                   const IODRule* rule);

  /** Get current date in DICOM 'DA' format (YYYYMMDD)
   *  @param  dateString String used to store the current date.
   *          (empty string if current date could not be retrieved)
   *  @return Resulting character string
   */
  static const OFString& currentDate(OFString &dateString);

  /** Get current time in DICOM 'TM' format (HHMMSS)
   *  The optional UTC notation (e.g.\ +0100) is currently not supported.
   *  @param  timeString String used to store the current time
   *                     (empty string if current time could not be retrieved)
   *  @return Resulting character string, empty if time could not be retrieved
   */
  static const OFString& currentTime(OFString &timeString);

  /** Copy given element to the dataset
   *  The element is only added if 'result' is EC_Normal. A copy of the given
   *  element is created, i.e.\ the caller is responsible for deleting the
   *  original element handed to this function (if desired).
   *  @param  result Reference to status variable (checked before adding and
   *          updated afterwards!)
   *  @param  dataset Reference to DICOM dataset to which the element should
   *          be added
   *  @param  delem Reference to DICOM element which should be added; a
   *          copy is created so caller is responsible for deleting delem (if
   *          desired).
   *  @param  vm Value multiplicity (according to the data dictionary) to be
   *          checked for. (See DcmElement::checkVM() for a list of valid
   *          values.). Interpreted as cardinality (number of items) for
   *          sequence attributes.
   *  @param  type  Value type (valid value: "1", "2" or something else which
   *          is not checked)
   *  @param  moduleName Optional module name to be printed (NULL: no module
   *          printed at all)
   *  @return Current value of 'result', EC_Normal if successful,
   *          an error code otherwise
   */
  static OFCondition copyElementToDataset(OFCondition &result,
                                          DcmItem &dataset,
                                          const DcmElement &delem,
                                          const OFString &vm,
                                          const OFString &type,
                                          const char *moduleName = NULL);

  /** Copy given element to the dataset. The element is only added if 'result'
   *  is EC_Normal.
   *  @param  result reference to status variable (checked before adding and
   *          updated afterwards!)
   *  @param  dataset reference to DICOM dataset to which the element
   *          should be added
   *  @param  delem reference to DICOM element which should be added; the value
   *          is copied from the original dataset's element
   *  @param  rule  Rule describing parameters to be checked on element.
   *  @return Current value of 'result', EC_Normal if successful, an error code
   *          otherwise
   */
  static OFCondition copyElementToDataset(OFCondition &result,
                                          DcmItem &dataset,
                                          const DcmElement &delem,
                                          const IODRule* rule);

  /** Add given element to the dataset
   *  The element is only added if 'result' is EC_Normal and the 'delem'
   *  pointer is not NULL.
   *  @param  result Reference to status variable (checked before adding and
   *          updated afterwards!)
   *  @param  dataset Reference to DICOM dataset to which the element should
   *          be added
   *  @param  delem Pointer to DICOM element which should be added. The element
   *          is always consumed by this function, i.e.\ insertion was successful
   *          and therefore ownership is transferred to the dataset, or the
   *          element is deleted from memory if it could not be inserted.
   *  @param  rule  Rule describing parameters to be checked on element.
   *  @return Current value of 'result', EC_Normal if successful, an error code otherwise
   */
  static OFCondition addElementToDataset(OFCondition &result,
                                         DcmItem &dataset,
                                         DcmElement *delem,
                                         const IODRule* rule);

  /** Check element value for correct value multiplicity and type.
   *  @param  delem Pointer to DICOM element to be checked (might be NULL)
   *  @param  tagKey DICOM tag of the DICOM element the parameter 'delem' points to
   *  @param  vm Value multiplicity (according to the data dictionary) to be checked for.
   *          (See DcmElement::checkVM() for a list of valid values.)
   *          Interpreted as cardinality (number of items) for sequence attributes.
   *  @param  type Value type (valid value: "1", "1C", "2", something else)
   *  @param  searchCond Optional flag indicating the status of a previous 'search' function call
   *  @param  moduleName Optional module name to be printed (default: "IOD" if NULL)
   *  @param  logLevel The log level to log errors to
   *  @return EC_Normal if element value is correct, error otherwise
   */
  static OFCondition checkElementValue(const DcmElement *delem,
                                       const DcmTagKey &tagKey,
                                       const OFString &vm,
                                       const OFString &type,
                                       const OFCondition &searchCond = EC_Normal,
                                       const char *moduleName = NULL,
                                       const dcmtk::log4cplus::LogLevel logLevel = dcmtk::log4cplus::WARN_LOG_LEVEL);

  /** Check element value for correct value multiplicity and type.
   *  @param  delem DICOM element to be checked
   *  @param  vm Value multiplicity (according to the data dictionary) to be checked for.
   *          (See DcmElement::checkVM() for a list of valid values.)
   *          Interpreted as cardinality (number of items) for sequence attributes.
   *  @param  type Value type (valid value: "1", "1C", "2", something else)
   *  @param  searchCond Optional flag indicating the status of a previous 'search' function call
   *  @param  moduleName Optional module name to be printed (default: "IOD" if NULL)
   *  @param  logLevel The log level to log errors to
   *  @return EC_Normal if element value is correct, error otherwise
   */
  static OFCondition checkElementValue(const DcmElement &delem,
                                       const OFString &vm,
                                       const OFString &type,
                                       const OFCondition &searchCond = EC_Normal,
                                       const char *moduleName = NULL,
                                       const dcmtk::log4cplus::LogLevel logLevel = dcmtk::log4cplus::WARN_LOG_LEVEL);

  /** Get string value from element
   *  @param  delem DICOM element from which the string value should be retrieved
   *  @param  stringValue Reference to variable in which the result should be stored.
   *          (This parameter is automatically cleared if an error occurs.)
   *  @param  pos Index of the value to get (0..vm-1), -1 for all components
   *  @return EC_Normal if successful, an error code otherwise
   */
  static OFCondition getStringValueFromElement(const DcmElement &delem,
                                               OFString &stringValue,
                                               const signed long pos);

  /** Get string value from item
   *  @param  key The tag key of the attribute whose value should be retrieved
   *  @param  item The item to search the attribute in
   *  @param  result Reference to variable in which the result should be stored.
   *          (This parameter is automatically cleared if an error occurs.)
   *  @param  pos Index of the value to get (0..vm-1), -1 for all components
   *  @return EC_Normal if successful, an error code otherwise
   */
  static OFCondition getStringValueFromItem(const DcmTagKey& key,
                                            DcmItem& item,
                                            OFString& result,
                                            const signed long& pos);

  /** Get Float64 value from item
   *  @param  key The tag key of the attribute whose value should be retrieved
   *  @param  item The item to search the attribute in
   *  @param  result Reference to variable in which the result should be stored.
   *  @param  pos Index of the value to get (0..vm-1)
   *  @return EC_Normal if successful, an error code otherwise
   */
  static OFCondition getFloat64ValueFromItem(const DcmTagKey& key,
                                             DcmItem& item,
                                             Float64& result,
                                             const unsigned long& pos);

  /** Get Float64 values from item
   *  @param  key The tag key of the attribute whose value should be retrieved
   *  @param  item The item to search the attribute in
   *  @param  result Reference to variable in which the result should be stored.
   *  @return EC_Normal if successful, an error code otherwise
   */
  static OFCondition getFloat64ValuesFromItem(const DcmTagKey& key,
                                              DcmItem& item,
                                              OFVector<Float64>& result);

  /** Get Float64 value from element
   *  @param  delem The element whose value should be retrieved
   *  @param  result Reference to variable in which the result should be stored.
   *  @param  pos Index of the value to get (0..vm-1)
   *  @return EC_Normal if successful, an error code otherwise
   */
  static OFCondition getFloat64ValueFromElement(const DcmElement &delem,
                                                Float64& result,
                                                const unsigned long pos);

  /** Get Float64 values from element
   *  @param  delem The element to get the value from
   *  @param  result Reference to variable in which the result should be stored.
   *  @return EC_Normal if successful, an error code otherwise
   */
  static OFCondition getFloat64ValuesFromElement(const DcmElement &delem,
                                                 OFVector<Float64>& result);

  /** Set a DcmElement's content from Uint16 vector
   *  @param  delem DICOM element to be filled
   *  @param  values Vector use as a source for the values
   *  @param  vm Value multiplicity (according to the data dictionary) to be
   *           checked for. (See DcmElement::checkVM() for a list of
   *           valid values.)
   *  @param  check If OFTrue, then it is checked whether number of values
   *          conforms to the value provided by the vm parameter.
   *  @return Dtatus, EC_Normal if successful, an error code otherwise
   */
  static OFCondition setUint16ValuesOnElement(DcmElement &delem,
                                              const OFVector<Uint16>& values,
                                              const OFString& vm,
                                              const OFBool check);

  /** Get Uint16 values from DcmElement
   *  @param  delem  DICOM element to read from
   *  @param  values Vector used as destination for the values
   *  @return Status EC_Normal if successful, an error code otherwise
   */
  static OFCondition getUint16ValuesFromElement(DcmElement &delem,
                                                OFVector<Uint16>& values);

  /** Returns single item from given sequence. Returns error number of items
   *  is 0 or more than 1.
   *  @param  seq Sequence to read from.
   *  @param  item The resulting item, NULL in case of error
   *  @param  checkKey If given it is checked whether the given seq parameter
   *          matches the tag key provided in the checkKey parameter. If
   *          not, an error is returned.
   *  @return Status EC_Normal if successful, an error code otherwise
   */
  static OFCondition getAndCheckSingleItem(DcmSequenceOfItems& seq,
                                           DcmItem*& item,
                                           const DcmTagKey& checkKey = DCM_UndefinedTagKey);

  /** Copies Uint8 values from given element to destination container
   *  (must support push_back() method).
   *  @param elem the element to read from. If NULL, an error is returned.
   *  @param destination the container to store the Uint8 values to
   *  @return EC_Normal if successful, an error code otherwise
   */
  template <class Container>
  static OFCondition copyFromUint8Array(DcmElement* elem,
                                        Container& destination)
  {
    if (elem == NULL)
    return EC_IllegalParameter;

    size_t vm = elem->getVM();
    OFCondition result;
    for (size_t count = 0; (count < vm) && result.good(); count ++)
    {
      Uint8 value;
      result = elem->getUint8(value, OFstatic_cast(unsigned long, count));
      if ( result.good() )
      {
        destination.push_back(value);
      }
    }
    if ( result.bad() )
    {
      destination.clear();
    }
    return result;
  }

  /** Check whether SOP class UID matches the expected value
   *  @param  item Item to read from. NULL value causes error return value.
   *  @param  desiredSOPClass The value that is expected
   *  @param  valueFound The value actually found (empty if no value could
   *          be retrieved)
   *  @return EC_Normal if value could be found and equals expected value,
   *          EC_TagNotFound if SOP Class UID is not found in dataset,
   *          EC_InvalidValue if SOP class differs from expected value.
   */
  static OFCondition checkSOPClass(DcmItem* item,
                                   const OFString& desiredSOPClass,
                                   OFString& valueFound);

  /** Check whether given tag is a sequence tag
   *  @param  key the tag key to be checked
   *  @param  privateCreator The private creator to check for if tag is private
   *  @return OFTrue if given tag is a sequence tag, OFFalse otherwise
   */
  static OFBool isSequenceTag(const DcmTagKey& key,
                              const OFString& privateCreator = "");

  /** Reads items from DICOM sequence into container by creating a dedicated
   *  container item for each DICOM item. The container must support
   *  push_back(T) function and the container's element type T must support
   *  the read(DcmItem*) function.
   *  @param  source The source sequence to read items from
   *  @param  seqKey The sequence's tag key that is expected
   *  @param  destination The destination container to read into
   *  @param  cardinality Expected number of items.
   *          See DcmElement::checkVM() for a list of valid values.
   *  @param  type The sequence type as noted in part 3 of the DICOM standard,
   *          i.e.\ "1,1C,2,2C or 3".
   *  @param  module Name of the module/macro this sequence is contained in. Used
   *          for error messages and can also be left empty.
   *  @return EC_Normal if successful, an error code otherwise
   */
  template <class Container>
  static OFCondition readSubSequence(DcmSequenceOfItems* source,
                                    const DcmTagKey& seqKey,
                                    Container& destination,
                                    const OFString& cardinality,
                                    const OFString& type,
                                    const OFString& module)
  {
    OFCondition result;
    OFCondition exists = EC_Normal;
    if (!source)
      exists = EC_TagNotFound;

    /* Check sequence and report errors as warnings, read anyway */
    checkElementValue(source, seqKey, cardinality, type, exists, module.c_str());
    if (source)
    {
      DcmItem *item = OFstatic_cast(DcmItem*, source->nextInContainer(NULL));
      size_t count = 0;
      while (item != NULL)
      {
        if (item != NULL)
        {
          // define the element type
          typedef typename OFremove_pointer<typename Container::value_type>::type Element;
          Element *newElem = new Element();
          // read into container item (clears old data first)
          if ( newElem != NULL)
          {
            result = (newElem)->read(*item, OFFalse /* no need to delete anything */);
            if ( result.good() )
            {
              destination.push_back(newElem);
            }
            else
            {
              delete newElem;
              DCMIOD_WARN("Could not read item #" << count << " from " << DcmTag(source->getTag()).getTagName() << " (skipping item): " << result.text());
            }
          }
          else
          {
            DCMIOD_ERROR("Could not store data from item #" << count << " from " << DcmTag(source->getTag()).getTagName() << " (skipping item): Memory exhausted?");
          }
        }
        else
        {
          DCMIOD_WARN("Could not get item #" << count << " from " <<  DcmTag(source->getTag()).getTagName() << " (malformed data or internal error), skipping item");
        }
        item = OFstatic_cast(DcmItem*, source->nextInContainer(item));
        count++;
      }
    }
    else
    {
      result = EC_IllegalParameter;
    }
    return result;
  }


  /** Reads DICOM sequence into container by creating a dedicated container element
   *  for each DICOM item. The container must support push_back(T) function
   *  and the container's element type T must support the read(DcmItem*) function.
   *  @param  source The source DICOM item read the sequence from
   *  @param  seqKey The tag key of the sequence to be read
   *  @param  destination The destination container to read into
   *  @param  cardinality Expected number of items.
   *          See DcmElement::checkVM() for a list of valid values.
   *  @param  type The sequence type as noted in part 3 of the DICOM standard,
   *          i.e.\ "1,1C,2,2C or 3".
   *  @param  module Nname of the module/macro this sequence is contained in. Used
   *          for error messages and can also be left empty.
   *  @return status EC_Normal if successful, an error code otherwise
   */
  template <class Container>
  static OFCondition readSubSequence(DcmItem& source,
                                     const DcmTagKey& seqKey,
                                     Container& destination,
                                     const OFString& cardinality,
                                     const OFString& type,
                                     const OFString& module)
  {
    OFCondition result;
    DcmSequenceOfItems *seq = NULL;

    /* Get sequence and read it */
    source.findAndGetSequence(seqKey, seq);
    result = readSubSequence(seq, seqKey, destination, cardinality, type, module );
    return result;
  }


  /** Reads DICOM sequence into container by creating a dedicated container
   *   element for each DICOM item. The container must support the
   *   push_back(T) function and the container's element type T must support
   *   the read(DcmItem*) function.
    *  @param  source The source DICOM item read the sequence from
    *  @param  seqKey The tag key of the sequence to be read
    *  @param  destination The destination container to read into
    *  @param  rule The rule for reading this sequence. If NULL, an error is returned.
    *  @return EC_Normal if successful, an error code otherwise
    */
  template <class Container>
  static OFCondition readSubSequence(DcmItem& source,
                                     const DcmTagKey& seqKey,
                                     Container& destination,
                                     IODRule *rule)
  {
    if (rule == NULL)
    {
      DCMIOD_ERROR("Cannot read sequence " << seqKey << " (no rule supplied)");
      return IOD_EC_NoSuchRule;
    }
    return readSubSequence<Container>(source, seqKey, destination, rule->getVM(), rule->getType(), rule->getModule());
  }


  /** Reads single DICOM item from a specific sequence into a destination class.
   *  The container must support the read(DcmItem) function. If a single item
   *  (i.e.\ the first item of the specified sequence) cannot be read, an error
   *  is returned.
   *  @param  source The source DICOM item read the sequence from
   *  @param  seqKey The tag key of the sequence to be read
   *  @param  destination The destination container to read into
   *          See DcmElement::checkVM() for a list of valid values.
   *  @param  type The sequence type as noted in part 3 of the DICOM standard,
   *          i.e.\ "1,1C,2,2C or 3".
   *  @param  module Name of the module/macro this sequence is contained in.
   *          Used for error messages and can also be left empty.
   *  @return EC_Normal if successful, an error code otherwise
   */
  template <class Container>
  static OFCondition readSingleItem(DcmItem& source,
                                    const DcmTagKey& seqKey,
                                    Container& destination,
                                    const OFString& type,
                                    const OFString& module)
  {
    OFCondition result;
    /* Check sequence, reports cardinality and type errors as warnings */
    checkSubSequence(result, source, seqKey, "1", type, module, dcmtk::log4cplus::WARN_LOG_LEVEL);

    /* Try to read sequence into internal data (ignore errors as much as possible) */
    DcmItem* item = NULL;
    result = source.findAndGetSequenceItem(seqKey, item, 0);
    if (item != NULL)
    {
      // read into Container (clears old data first)
      result = destination.read(*item, OFTrue /* clear old data */);
    }
    return result;
  }

  /** Reads single DICOM item from a specific sequence into a destination class.
   *  The container must support the read(DcmItem) function. If a single item
   *  (i.e.\ the first item of the specified sequence) cannot be read, an error
   *  is returned.
   *  @param  source The source DICOM item read the sequence from
   *  @param  seqKey The tag key of the sequence to be read
   *  @param  destination The destination container to read into
   *          See DcmElement::checkVM() for a list of valid values.
   *  @param  rule The rule (for the sequence) used for reading.
   *  @return EC_Normal if successful, an error code otherwise.  If the rule
   *          equlas NULL, then nothing is read at all and an error is returned
   *          (IOD_EC_NoSuchRule), but no error is reported to the logger.
   */
  template <class Container>
  static OFCondition readSingleItem(DcmItem& source,
                                    const DcmTagKey& seqKey,
                                    Container& destination,
                                    IODRule *rule = NULL)
  {
    if (rule == NULL)
    {
      DCMIOD_DEBUG("Will not read sequence " << seqKey << ": No rule supplied");
      return IOD_EC_NoSuchRule;
    }

    return readSingleItem(source, seqKey, destination, rule->getType(), rule->getModule());
  }

  /** Write given container into a DICOM sequence that is created within the
   *  given item. The sequence is created from scratch, i.e.\ any old sequence
   *  (and its items) will be overwritten.
   *  @param  result If writing is successful, result will contain EC_Normal.
   *          Otherwise an error code is set.
   *  @param  seqKey The tag key of the sequence to be write
   *  @param  source The source container to read from. Must support the
   *          write(DcmItem*) function.
   *  @param  destination The DICOM destination item to write the sequence to
   *          See DcmElement::checkVM() for a list of valid values.
   *  @param  cardinality  Expected number of items (i.e.\ expected number of
   *          elements in source container). See DcmElement::checkVM() for a
   *          list of valid values.
   *  @param  type The sequence type as noted in part 3 of the DICOM standard,
   *          i.e.\ "1,1C,2,2C or 3".
   *  @param  module Name of the module/macro this sequence is contained in. Used
   *                 for error messages and can also be left empty.
   */
  template <class Container>
  static void writeSubSequence(OFCondition& result,
                               const DcmTagKey& seqKey,
                               Container& source,
                               DcmItem& destination,
                               const OFString& cardinality,
                               const OFString& type,
                               const OFString& module)
  {
    if ( result.good() )
    {
      // Delete old data
      destination.findAndDeleteElement(seqKey);

      // If we have meaningful data, write it
      OFBool haveData = source.size() > 0;
      if (haveData)
      {
        destination.insertEmptyElement(seqKey);
        Uint32 count = 0;
        typename Container::iterator it = source.begin();
        while ( it != source.end() && result.good() )
        {
          if ( (*it) != NULL)
          {
            DcmItem *localItem = NULL;
            // If item is NULL result.bad() is always true.
            result = destination.findOrCreateSequenceItem(seqKey, localItem, -2 /* append new */);
            if ( result.good() )
            {
              result = (*it)->write(*localItem);
              if ( result.bad() )
              {
                  destination.findAndDeleteSequenceItem(seqKey, -1 /* last */);
                  DCMIOD_ERROR("Could not write item #" << count << " in " << DcmTag(seqKey).getTagName() << ": " << result.text());
              }
            }
            else
            {
                DCMIOD_ERROR("Could not insert item data #" << count << " of " << DcmTag(seqKey).getTagName() << " (internal error), ignoring");
            }
          }
          else
          {
            DCMIOD_ERROR("Found uninitialized container item (NULL value) for sequence " << DcmTag(seqKey).getTagName() << " (internal error, skipping)");
          }
          count++;
          it++;
        }
      }
      // If we do not have data, create empty sequence if type 2
      else if (type == "2")
      {
        destination.insertEmptyElement(seqKey);
      }

      // Check result
      checkSubSequence(result, destination, seqKey, cardinality, type, module, dcmtk::log4cplus::ERROR_LOG_LEVEL);

      // Clean up if we did not have success */
      if (result.bad())
      {
        destination.findAndDeleteElement(seqKey);
      }
    }
  }

  /** Write given container into a DICOM sequence that is created within the given item.
   *  The container. The sequence is created from scratch, i.e.\ any old sequence
   *  (and its items) will be overwritten.
   *  @param  result If writing is successful, result will contain EC_Normal. Otherwise
   *          an error code is set.
   *  @param  seqKey The tag key of the sequence to be write
   *  @param  source The source container to read from. Must support the write(DcmItem*)
   *          function.
   *  @param  destination The DICOM destination item to write the sequence to
   *  @param  rule Rule describing the requirements for this sequence. If NULL
   *          an error is returned (IOD_EC_NoSuchRule), but no error error is reported
   *          to the logger.
   */
  template <class Container>
  static void writeSubSequence(OFCondition& result,
                               const DcmTagKey& seqKey,
                               Container& source,
                               DcmItem& destination,
                               IODRule* rule)
  {
    if ( result.good() )
    {
      if (rule == NULL)
      {
        DCMIOD_DEBUG("Will not write sequence " << seqKey << ": No rule supplied");
        result = IOD_EC_NoSuchRule;
      }
      else
      {
        writeSubSequence<Container>(result, rule->getTagKey(), source, destination, rule->getVM(), rule->getType(), rule->getModule());
      }
    }
  }


  /** Writes given container into a DICOM item of a specific sequence. The
   *  sequence is created from scratch so that any old information will be lost.
   *  @param  result If writing is successful, result will contain EC_Normal.
   *          Otherwise an error code is set.
   *  @param  seqKey The tag key of the sequence to be written
   *  @param  source The source container to read from. Must support the write(DcmItem*)
   *          function.
   *  @param  destination The DICOM item that should hold the sequence
   *          (with a single item) in the end.
   *  @param  type The sequence type as noted in part 3 of the DICOM standard,
   *          i.e.\ "1,1C,2,2C or 3".
   *  @param  module Name of the module/macro this sequence is contained in.
   *          Used for error messages and can also be left empty.
   */
  template <class Container>
  static void writeSingleItem(OFCondition& result,
                              const DcmTagKey& seqKey,
                              Container& source,
                              DcmItem& destination,
                              const OFString& type,
                              const OFString& module)
  {
    if ( result.good() )
    {
      // Delete old data
      destination.findAndDeleteElement(seqKey);

      /* If we have data, write it */
      OFCondition haveData = source.check(OFTrue /* Be quiet */);
      if (haveData.good())
      {
        DcmItem *localItem = NULL;
        // If item is NULL result.bad() is always true.
        result = destination.findOrCreateSequenceItem(seqKey, localItem, 0);
        if ( result.good() )
        {
          result = source.write(*localItem);
          // It can happen that check() returns OK but no elements have to be
          // written at all (e.g.\ if it contains only type 3 attributes). In that
          // case a sequence with a single empty item is written which must be removed
          // afterwards.
          if (result.good() && (localItem->card() == 0) )
          {
            destination.findAndDeleteElement(seqKey);
          }
        }
      }
      /* If we do not have data, insert empty for type 2 */
      else if (type == "2")
      {
        destination.insertEmptyElement(seqKey);
      }
      else if (type == "1C")
      {
        DCMIOD_TRACE("Skipping type 1C sequence " << seqKey << ": No data or incomplete data available");
      }
      else if (type  == "3")
      {
        DCMIOD_TRACE("Skipping type 3 sequence " << seqKey << ": No data or incomplete data available");
      }
      /* Check outcome */
      checkSubSequence(result, destination, seqKey, "1", type, module, dcmtk::log4cplus::ERROR_LOG_LEVEL);
    }
  }

  /** Writes given container into a DICOM item of a specific sequence.
   *  The sequence is created from scratch so that any old information
   *  will be lost.
   *  @param  result If writing is successful, result will contain EC_Normal.
   *          Otherwise an error code is set.
   *  @param  seqKey The tag key of the sequence to be written
   *  @param  source The source container to read from. Must support the
   *          write(DcmItem*) function.
   *  @param  destination The DICOM item that should hold the sequence
   *          (with a single item) in the end.
   *  @param  rule The rule for writing the given sequence
   */
  template <class Container>
  static void writeSingleItem(OFCondition& result,
                              const DcmTagKey& seqKey,
                              Container& source,
                              DcmItem& destination,
                              IODRule *rule)
  {
    if (result.good())
    {
      if (rule == NULL)
      {
        DCMIOD_ERROR("Cannot write sequence " << seqKey << " (no rule supplied)");
        result = EC_CannotCheck;
      }
      else
      {
        writeSingleItem(result, seqKey, source, destination, rule->getType(), rule->getModule());
      }
    }
  }


  /** Check whether a given sequence exists in a given item and whether it conforms to
   *  to its requirement type
   *  @param  result If sequence is valid, result is set to EC_Normal, otherwise
   *          to an error.
   *  @param  surroundingItem The item that should contain the given sequence.
   *  @param  seqKey The sequence to look for
   *  @param  cardinality Expected number of items (i.e.\ expected number of
   *          elements in source container). See DcmElement::checkVM() for a
   *          list of valid values.
   *  @param  type The sequence type as noted in part 3 of the DICOM standard,
   *          i.e.\ "1,1C,2,2C or 3".
   *  @param  module Name of the module/macro this sequence is contained in.
   *          Used for error messages and can also be left empty.
   *  @param  logLevel The log level to write errors to
   */
  static void checkSubSequence(OFCondition& result,
                               DcmItem& surroundingItem,
                               const DcmTagKey& seqKey,
                               const OFString& cardinality,
                               const OFString& type,
                               const OFString& module,
                               const dcmtk::log4cplus::LogLevel logLevel);

  /** Deletes all elements from given container and calls "delete" on each
   *  of them to clear memory.
   *  @param container  The container that should be cleared. Must contain
   *         pointers to objects that are allocated on the heap.
   */
  template<class Container>
  static void freeContainer(Container& container)
  {
    typename Container::iterator it = container.begin();
    while (it != container.end())
    {
      delete *it;
      it++;
    }
    container.clear();
  }

  /** Clones and copies all elements from source to destination container by
   *  copy constructing all elements.
   *  @param src  The container that should be copied. Must contain pointers
   *         to objects that are allocated on the heap, and that are
   *         copy-constructible
   *  @param dst  The container to copy the cloned elements to.
   */
  template<class Container>
  static void copyContainer(const Container& src, Container& dst)
  {
    typedef typename OFremove_pointer<typename Container::value_type>::type Element;
    typename Container::const_iterator it = src.begin();
    while (it != src.end())
    {
      if (*it != NULL)
      {
        Element *elem = new Element(**it);
        dst.push_back ( elem );
      }
      else
      {
        DCMIOD_ERROR("Could not copy element while copying container: Element is NULL, skipping");
      }
      it++;
    }
  }


  template <typename ModuleType>
  static OFCondition setContentDateAndTimeNow(ModuleType& module)
  {
    OFDate date;
    date.setCurrentDate();
    OFString tempstr;
    date.getISOFormattedDate(tempstr, OFFalse /* no delimiters */);
    OFCondition result = module.setContentDate(tempstr);
    if (result.good())
    {
      OFTime time;
      time.setCurrentTime();
      time.getISOFormattedTime(tempstr, OFTrue /* include seconds */, OFFalse, OFFalse, OFFalse);
      result = module.setContentTime(tempstr);
    }
    return result;
  }


  /** Function that takes a string representation of a tag key and
   *  converts it to a tag key instance if possible
   *  @param  keyString String of the format "(gggg,eeee)"
   *  @return The tag key if it could be parsed, DCM_UndefinedTagKey is returned
   *          instead (0xffff,0xffff)
   */
  static const DcmTagKey parseTagKey(const OFString& keyString);

  /** Decompress given dataset if possible. Decompression codecs have to be
   *  registered beforehand.
   *  @param  dset The dataset to decompress
   *  @return EC_Normal if decompression works, error otherwise
   */
  static OFCondition decompress(DcmDataset& dset);

  /** Create new Unique Identifier (UID)
    *  @param  level 0: instance level, 1: Series level, >=2: Study level.
    *          Calling always with level=0 is not an error but will result
    *          in unique values, too.
    *  @return The UID created.
    */
  static OFString createUID(const Uint8 level = 0);

  /** Print warning if more than 65535 frames are present. This is the maximum
   *  number since the Number of Frames attribute is only 16 bit thus not
   *  permitting larger values.
   *  The method returns the number of frames that can be used, i.e. either
   *  65535 if the maximum is exceeded, otherwise the actual number of frames.
   *  @param  numFramesPresent The number of frames actually present
   *  @param  warning The message to be printed if Number of Frames is larger
   *          than 65535.
   *  @return Number of frames that can be safely used.
   */
  static Uint16 limitMaxFrames(const size_t numFramesPresent,
                               const OFString& warning);

private:

  // We only have static functions so we do not need an instance of
  // this class so far.

  /** Undefined default constructor (only static functions)
   */
  DcmIODUtil();

  /** Undefined destructor
   */
  ~DcmIODUtil();
};

#endif // IODUTIL_H