/usr/include/CiftiLib/Cifti/CiftiXML.h is in libcifti-dev 1.5.1-1build1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 | #ifndef __CIFTI_XML_H__
#define __CIFTI_XML_H__
/*LICENSE_START*/
/*
* Copyright (c) 2014, Washington University School of Medicine
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification,
* are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
*
* 2. Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
* THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
* FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
* (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
* LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
* ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
* (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE,
* EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*/
#include "CiftiMappingType.h"
#include "CiftiVersion.h"
#include "MetaData.h"
#include "CiftiBrainModelsMap.h"
#include "CiftiLabelsMap.h"
#include "CiftiParcelsMap.h"
#include "CiftiScalarsMap.h"
#include "CiftiSeriesMap.h"
#include "boost/shared_ptr.hpp"
#include <vector>
namespace cifti
{
///class for retrieving and setting mapping information of cifti files
class CiftiXML
{
public:
enum
{
ALONG_ROW = 0,
ALONG_COLUMN = 1,
ALONG_STACK = 2//better name for this?
};
int getNumberOfDimensions() const { return m_indexMaps.size(); }
const CiftiVersion& getParsedVersion() const { return m_parsedVersion; }
///can return null in unfilled XML object
const CiftiMappingType* getMap(const int& direction) const;
///can return null in unfilled XML object
CiftiMappingType* getMap(const int& direction);
const MetaData& getFileMetaData() const;
CiftiMappingType::MappingType getMappingType(const int& direction) const;//convenience functions
const CiftiBrainModelsMap& getBrainModelsMap(const int& direction) const;
CiftiBrainModelsMap& getBrainModelsMap(const int& direction);
const CiftiLabelsMap& getLabelsMap(const int& direction) const;
CiftiLabelsMap& getLabelsMap(const int& direction);
const CiftiParcelsMap& getParcelsMap(const int& direction) const;
CiftiParcelsMap& getParcelsMap(const int& direction);
const CiftiScalarsMap& getScalarsMap(const int& direction) const;
CiftiScalarsMap& getScalarsMap(const int& direction);
const CiftiSeriesMap& getSeriesMap(const int& direction) const;
CiftiSeriesMap& getSeriesMap(const int& direction);
int64_t getDimensionLength(const int& direction) const;
std::vector<int64_t> getDimensions() const;
void setNumberOfDimensions(const int& num);
void setMap(const int& direction, const CiftiMappingType& mapIn);
void setFileMetaData(const MetaData& mdIn) { m_fileMetaData = mdIn; }
void clear();
void readXML(XmlReader& xml);
void readXML(const std::vector<char>& text);
std::vector<char> writeXMLToVector(const CiftiVersion& writingVersion = CiftiVersion()) const;
void writeXML(XmlWriter& xml, const CiftiVersion& writingVersion = CiftiVersion()) const;
///uses the mapping types to figure out what the intent info should be
int32_t getIntentInfo(const CiftiVersion& writingVersion, char intentNameOut[16]) const;
CiftiXML() { }
CiftiXML(const CiftiXML& rhs);
CiftiXML& operator=(const CiftiXML& rhs);
bool operator==(const CiftiXML& rhs) const;
bool operator!=(const CiftiXML& rhs) const { return !((*this) == rhs); }
bool approximateMatch(const CiftiXML& rhs) const;
private:
std::vector<boost::shared_ptr<CiftiMappingType> > m_indexMaps;
CiftiVersion m_parsedVersion;
MetaData m_fileMetaData;
void copyHelper(const CiftiXML& rhs);
//parsing functions
void parseCIFTI1(XmlReader& xml);
void parseMatrix1(XmlReader& xml);
void parseCIFTI2(XmlReader& xml);
void parseMatrix2(XmlReader& xml);
void parseMatrixIndicesMap1(XmlReader& xml);
void parseMatrixIndicesMap2(XmlReader& xml);
//writing functions
void writeMatrix1(XmlWriter& xml) const;
void writeMatrix2(XmlWriter& xml) const;
};
}
#endif //__CIFTI_XML_H__
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