/usr/include/Bpp/Phyl/Model/Codon/ is in libbpp-phyl-dev 2.4.0-1.
This file is owned by root:root, with mode 0o755.
..
/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.h
/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.h
/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.h
/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.h
/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.h
/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h
/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.h
/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h
/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h
/usr/include/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h
/usr/include/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h
/usr/include/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h
/usr/include/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h
/usr/include/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.h
/usr/include/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h
/usr/include/Bpp/Phyl/Model/Codon/GY94.h
/usr/include/Bpp/Phyl/Model/Codon/KCM.h
/usr/include/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.h
/usr/include/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.h
/usr/include/Bpp/Phyl/Model/Codon/MG94.h
/usr/include/Bpp/Phyl/Model/Codon/SENCA.h
/usr/include/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h
/usr/include/Bpp/Phyl/Model/Codon/YN98.h
/usr/include/Bpp/Phyl/Model/Codon/YNGP_M.h
/usr/include/Bpp/Phyl/Model/Codon/YNGP_M1.h
/usr/include/Bpp/Phyl/Model/Codon/YNGP_M10.h
/usr/include/Bpp/Phyl/Model/Codon/YNGP_M2.h
/usr/include/Bpp/Phyl/Model/Codon/YNGP_M3.h
/usr/include/Bpp/Phyl/Model/Codon/YNGP_M7.h
/usr/include/Bpp/Phyl/Model/Codon/YNGP_M8.h
/usr/include/Bpp/Phyl/Model/Codon/YNGP_M9.h