/usr/include/BALL/DOCKING/GENETICDOCK/genes.h is in libball1.4-dev 1.4.3~beta1-4.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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// $Maintainer: Marcel Schumann $
// $Authors: Jan Fuhrmann, Marcel Schumann $
// ----------------------------------------------------
#ifndef BALL_DOCKING_GENETICDOCK_GENES_H
#define BALL_DOCKING_GENETICDOCK_GENES_H
#include <vector>
#include <BALL/MATHS/quaternion.h>
namespace BALL
{
class RandomNumberGenerator;
/** pure virtual base class
*/
class BALL_EXPORT GenericGene
{
public:
/** destructor
*/
virtual ~GenericGene(){};
/** mate two genes
*/
virtual GenericGene* mate(GenericGene* gg) = 0;
/** mutate gene
*/
virtual void mutate() = 0;
/** clone method
*/
virtual GenericGene* clone() = 0;
/** set gene to random value
*/
virtual void randomize() = 0;
/** initilize random number generator
*/
static void initializeRNG();
protected:
/** random number generator for all genes
*/
static RandomNumberGenerator rng_;
};
/** gene with an arbitrary number of double values
*/
class BALL_EXPORT DoubleGene: public GenericGene
{
public:
/** constructor
*/
DoubleGene();
/** destructor
*/
virtual ~DoubleGene();
/** constructor, i double values
*/
DoubleGene(Size i);
/** mating method
*/
virtual GenericGene* mate(GenericGene* gg);
/** mutation method
*/
virtual void mutate();
/** get vector of values
*/
std::vector<double> getValues();
/** set values
*/
void setValue(std::vector<double> v);
/** clone method
*/
virtual GenericGene* clone();
/** randomize values
*/
void randomize();
private:
/** genes values
*/
std::vector<double> values_;
};
/** gene with one quaternion value
*/
class BALL_EXPORT QuaternionGene: public GenericGene
{
public:
/** constructor
*/
QuaternionGene();
/** destructor
*/
virtual ~QuaternionGene();
/** mating method
*/
virtual GenericGene* mate(GenericGene* gg);
/** mutation method
*/
virtual void mutate();
/** returns quaternion vaue
*/
Quaternion getValue();
/** clone method
*/
virtual GenericGene* clone();
/** randomize quaternion
*/
void randomize();
private:
/** quaternion value
*/
Quaternion quat_;
};
}
#endif /* BALL_DOCKING_GENETICDOCK_GENES_H */
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