This file is indexed.

/usr/bin/h5redeploy is in hdf5-tools 1.10.0-patch1+docs-4.

This file is owned by root:root, with mode 0o755.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
#! /bin/sh
#
# Copyright by The HDF Group.
# Copyright by the Board of Trustees of the University of Illinois.
# All rights reserved.
#
# This file is part of HDF5.  The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html.  COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page.  It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
#

## Update HDF5 compiler tools after the HDF5 software has been installed  ##
## in a new location.							  ##
## For help page, use "h5redeploy -help"				  ##
##									  ##

# Constants definitions
EXIT_SUCCESS=0
EXIT_FAILURE=1

# Function definitions

# show help page
usage() {
  # A wonderfully informative "usage" message.
  echo "usage: $prog_name [OPTIONS]"
  echo "  OPTIONS:"
  echo "    -help|help        This help message"
  echo "    -echo             Show all the shell commands executed"
  echo "    -force            No prompt, just do it"
  echo "    -prefix=DIR       New directory to find HDF5 lib/ and include/"
  echo "                        subdirectories [default: current directory]"
  echo "    -exec-prefix=DIR  New directory to find HDF5 lib/"
  echo "                        subdirectory [default: <prefix>]"
  echo "    -libdir=DIR       New directory for the HDF5 lib directory"
  echo "                        [default: <exec-prefix>/lib]"
  echo "    -includedir=DIR   New directory for the HDF5 header files"
  echo "                        [default: <prefix>/include]"
  echo "    -tool=TOOL        Tool to update. TOOL must be in the current"
  echo "                        directory and writable. [default: $h5tools]"
  echo "    -show             Show the commands without executing them"
  echo " "
  exit $EXIT_FAILURE
}

# display variable values
dump_vars(){
    echo "====Showing all variable values====="
    echo prefix=$prefix
    echo h5tools=$h5tools
    echo "====End Showing====="
}

# show actions to be taken
show_action()
{
    echo "Update the following tools because they are now installed at a new directory"
    for t in $foundtools; do
	echo "${t}:"
	echo "   current setting=`sed -e '/^prefix=/s/prefix=//p' -e d $t`"
	echo "   new     setting="\""$prefix"\"
    done
}


# Report Error message
ERROR()
{
    echo "***ERROR***"
    echo "$1"
}

# Main
#
############################################################################
## Installation directories:						  ##
## prefix	architecture-independent files.				  ##
## exec_prefix	architecture-dependent files, default is <prefix>.	  ##
## libdir	libraries, default is <exec_prefix>/lib.		  ##
## includedir	header files, default is <prefix/include>.		  ##
## Not used here:							  ##
## bindir	executables, <exec_prefix/bin>.				  ##
############################################################################
# Initialization
h5tools="h5cc h5pcc h5fc h5pfc h5c++"	# possible hdf5 tools
foundtools=		# tools found and will be modified
fmode=			# force mode, default is off
prefix=
exec_prefix=
libdir=
includedir=

# Parse options
for arg in $@ ; do
  case "$arg" in
    -prefix=*)
      prefix="`echo $arg | cut -f2 -d=`"
      ;;
    -exec-prefix=*)
      exec_prefix="`echo $arg | cut -f2 -d=`"
      ;;
    -libdir=*)
      libdir="`echo $arg | cut -f2 -d=`"
      ;;
    -includedir=*)
      includedir="`echo $arg | cut -f2 -d=`"
      ;;
    -echo)
      set -x
      ;;
    -show)
      SHOW="echo"
      ;;
    -tool=*)
      h5tools="`echo $arg | cut -f2 -d=`"
      ;;
    -help|help)
      usage
      ;;
    -force)
      fmode=yes
      ;;
    *)
      ERROR "Unknown Option($arg)"
      usage
      exit $EXIT_FAILURE
      ;;
  esac
done

# Set to default value, one above where i am, if not given by user
if [ -z "$prefix" ]; then
    prefix=`(cd ..;pwd)`
fi
if [ -z "$exec_prefix" ]; then
    exec_prefix='${prefix}'		# use single quotes to prevent expansion of $
fi
if [ -z "$libdir" ]; then
    libdir='${exec_prefix}'/lib	# use single quotes to prevent expansion of $
fi
if [ -z "$includedir" ]; then
    includedir='${prefix}'/include # use single quotes to prevent expansion of $
fi

for x in $h5tools; do
    if [ -f $x ]; then
	foundtools="$foundtools $x"
	if [ ! -w $x ]; then
	    ERROR "h5tool($x) is not writable"
	    exit $EXIT_FAILURE
	fi
    fi
done

if [ -z "$foundtools" ]; then
    ERROR "found no tools to modify"
    exit $EXIT_FAILURE
fi

# Show actions to be taken and get consent
show_action
# Ask confirmation unless fmode is on
if [ x-$fmode = x- ]; then
    echo "Continue? (yes/no)"
    read ansx
    ans=`echo $ansx | tr "[A-Z]" "[a-z]"`
    if [ x-$ans != x-yes ]; then
	echo ABORT.  No tools changed.
	exit $EXIT_FAILURE
    fi
fi


# Create the update commands
CMDFILE=/tmp/h5redeploy.$$
touch $CMDFILE
chmod 0600 $CMDFILE
echo "/^prefix=/c"                    >> $CMDFILE
echo prefix=\""$prefix"\"             >> $CMDFILE
echo .                                >> $CMDFILE
echo "/^exec_prefix=/c"               >> $CMDFILE
echo exec_prefix=\""$exec_prefix"\"   >> $CMDFILE
echo .                                >> $CMDFILE
echo "/^libdir=/c"                    >> $CMDFILE
echo libdir=\""$libdir"\"             >> $CMDFILE
echo .                                >> $CMDFILE
echo "/^includedir=/c"                >> $CMDFILE
echo includedir=\""$includedir"\"     >> $CMDFILE
echo .                                >> $CMDFILE
(echo w; echo q)                      >> $CMDFILE


# Update them
if [ "$SHOW" = "echo" ]; then
    echo "===Update commands are:===="
    cat $CMDFILE
    echo "===End Update commands====="
fi

for t in $foundtools; do
    echo Update $t ...
    COMMAND="ed - $t"
    if [ "$SHOW" = "echo" ]; then
	echo $COMMAND
    else
	$COMMAND < $CMDFILE
    fi
done


# Cleanup
rm -f $CMDFILE
exit $EXIT_SUCCESS