/usr/share/modules/init/r.R is in environment-modules 4.1.1-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 | # define modules runtine quarantine configuration
#Sys.setenv('MODULES_RUN_QUARANTINE'='ENVVARNAME')
# setup quarantine if defined
mlre <- ''
if (!is.na(Sys.getenv('MODULES_RUN_QUARANTINE', unset=NA))) {
for (mlv in strsplit(Sys.getenv('MODULES_RUN_QUARANTINE'), ' ')[[1]]) {
if (grepl('^[A-Za-z_][A-Za-z0-9_]*$', mlv)) {
if (!is.na(Sys.getenv(mlv, unset=NA))) {
mlre <- paste0(mlre, mlv, "_modquar='", Sys.getenv(mlv), "' ")
}
mlrv <- paste0('MODULES_RUNENV_', mlv)
mlre <- paste0(mlre, mlv, "='", Sys.getenv(mlrv), "' ")
}
}
if (mlre != '') {
mlre <- paste0('env ', mlre)
}
}
# define module command and surrounding initial environment (default value
# for MODULESHOME, MODULEPATH, LOADEDMODULES and parse of init/.modulespath)
cmdpipe <- pipe(paste0(mlre, '/usr/bin/tclsh /usr/lib/x86_64-linux-gnu/modulecmd.tcl r autoinit'))
eval(parse(cmdpipe))
close(cmdpipe)
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