/usr/lib/debian-med/bin/biocUpdate.sh is in bitseq 0.7.5+dfsg-3ubuntu1.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 | #!/bin/bash
# Script that automizes copying into Bioconductor repository.
# THE ASSUMPTION IS that there were no updates made to Bioc sources, thus can be just replaced by sources from C++ version.
if [ $# -ne 1 ]
then
echo "Usage: provide path to bioc sources directory (.../devel/src)"
echo " biocUpdate.sh [dirPath]"
exit
fi
for i in `ls $1`
do
if [ -e $i -a -f $i ]
then
other="${1}/${i}"
if ! diff -q $i $other > /dev/null
then
cp -v $i $other;
fi
fi
done
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