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/usr/share/xcrysden/examples/PDB/mol2.pdb is in xcrysden-data 1.5.60-1build3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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HEADER    PROTEIN
COMPND    mol2.pdb 
AUTHOR    GENERATED BY BABEL 1.6 
ATOM      1  C   UNK     1      -2.568   0.032  -0.221  1.00  0.00 
ATOM      2  F   UNK     1      -2.886   0.688   0.883  1.00  0.00 
ATOM      3  O   UNK     1      -1.383  -0.641  -0.041  1.00  0.00 
ATOM      4  C   UNK     1      -0.230   0.040  -0.089  1.00  0.00 
ATOM      5  F   UNK     1      -0.144   0.755  -1.203  1.00  0.00 
ATOM      6  F   UNK     1      -3.478  -0.891  -0.435  1.00  0.00 
ATOM      7  O   UNK     1       0.751  -0.880  -0.023  1.00  0.00 
ATOM      8  C   UNK     1       2.052  -0.506   0.091  1.00  0.00 
ATOM      9  F   UNK     1       2.455  -0.626   1.334  1.00  0.00 
ATOM     10  F   UNK     1      -0.132   0.912   0.909  1.00  0.00 
ATOM     11  F   UNK     1       2.777  -1.268  -0.681  1.00  0.00 
ATOM     12  O   UNK     1       2.543   1.857  -0.537  1.00  0.00 
ATOM     13  H   UNK     1      -2.530   0.719  -1.047  1.00  0.00 
ATOM     14  H   UNK     1       2.307   0.752  -0.271  1.00  0.00 
ATOM     15  H   UNK     1       2.084   2.305   0.170  1.00  0.00 
CONECT    1    2    3    6   13
CONECT    2    1
CONECT    3    1    4
CONECT    4    3    5    7   10
CONECT    5    4
CONECT    6    1
CONECT    7    4    8
CONECT    8    7    9   11   14
CONECT    9    8
CONECT   10    4
CONECT   11    8
CONECT   12   14   15
CONECT   13    1
CONECT   14    8   12
CONECT   15   12
MASTER        0    0    0    0    0    0    0    0   15    0   15    0
END