/usr/share/xcrysden/Tcl/xsfAnim.tcl is in xcrysden-data 1.5.60-1build3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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# Author: #
# ------ #
# Anton Kokalj Email: Tone.Kokalj@ijs.si #
# Department of Physical and Organic Chemistry Phone: x 386 1 477 3523 #
# Jozef Stefan Institute Fax: x 386 1 477 3811 #
# Jamova 39, SI-1000 Ljubljana #
# SLOVENIA #
# #
# Source: $XCRYSDEN_TOPDIR/Tcl/xsfAnim.tcl
# ------ #
# Copyright (c) 1996-2003 by Anton Kokalj #
#############################################################################
#
# tis proc is called form menu File->...->(Open XSF File)
#
proc xsfAnimOpenMenu {can} {
global fileselect
fileselect "Open AXSF Structure"
if { $fileselect(path) != "" } {
set file $fileselect(path)
} else {
puts stderr "WARNING:: \fileselect(path) = \"\""
flush stderr
return
}
xsfOpen $fileselect(path) $can
#xsfAnimInit $fileselect(path) $can
}
proc xsfAnimInit {filedir can} {
global system geng xcMisc periodic radio sInfo periodic xsfAnim
set FileName [file tail $filedir]
##################################
# everything must happen in SCRDIR
cd $system(SCRDIR)
set xsfAnim(nstep) [xsfParseAnim $filedir]
if { $xsfAnim(nstep) < 0 } {
# an Error has occured
tk_dialog [WidgetName] "ERROR" "ERROR: An error occured when parsing AXSF file $FileName !!!" error 0 OK
return 0
} elseif { $xsfAnim(nstep) == 0 } {
tk_dialog [WidgetName] "NOTIFICATION" "NOTIFICATION: Specified file $FileName seems to be an ordinary XSF file !!!" warning 0 OK
set xsfAnim(not_anim) 1
xsfOpen $filedir $can
return 1
}
set xsfAnim(current) 1
set xsfAnim(anim_step) 1
xsfOpen $system(SCRDIR)/$FileName.1 $can
set xsfAnim(filename) $FileName
xsfAnimWid $can
}
proc xsfAnimWid can {
global xsfAnim gifAnim xcMisc
if { ! [info exists xsfAnim(nstep)] } {
return
}
if { $xsfAnim(nstep) < 1 } {
return
}
# set the daley between slides (in msec)
set xsfAnim(delay) 50
set c [lindex [split $can .] end]
if { [winfo exists .anim$c] } {
return
}
set xsfAnim(label_text_current) "Current slide: $xsfAnim(current)/$xsfAnim(nstep)"
set gifAnim(anim_ctrl_widgets) 0
# from here on is just the widget managing
set t [xcToplevel .anim$c "Animation Control Center" "Animation" . -0 0 1]
set xsfAnim(tplw) $t
bind $t <Destroy> {xsfAnimWidClose %W}
# this is for "Hide" button
global unmapWin
xcRegisterUnmapWindow $t $unmapWin(frame,main) anim \
-textimage {Animate unmap}
bind $t <Unmap> [list xcUnmapWindow unmap %W $t \
$unmapWin(frame,main) anim]
bind $t <Map> [list xcUnmapWindow map %W $t \
$unmapWin(frame,main) anim]
# container frames
set f1 [frame $t.f1 -relief ridge -bd 2]
set f2 [frame $t.f2 -relief ridge -bd 2]
set f3 [frame $t.f3]
pack $f1 -side top -expand 1 -fill x \
-padx 2m -pady 2m -ipadx 2m -ipady 2m
pack $f2 -side top -expand 1 -fill x \
-padx 2m -ipadx 2m -ipady 1m
pack $f3 -side top
# --------------------------------------------------
# xsfAnim widgets
# --------------------------------------------------
set e1 [OneEntries $f1 \
{"Delay between slides (in msec):" "Animation step:"} \
{xsfAnim(delay) xsfAnim(anim_step)} 31 15 5 -side top]
set slide_label [label $f1.l1 -textvariable xsfAnim(label_text_current) -anchor c]
set lfont [ModifyFont [$slide_label cget -font] $slide_label -size 18 -underline 1]
$slide_label configure -font $lfont
set f_play [frame $f1.1]
set first [button $f_play.1st -image first -anchor center \
-command [list xsfAnimAction $can first]]
set backw [button $f_play.bck -image backward -anchor center \
-command [list xsfAnimAction $can backward]]
set previ [button $f_play.prv -image previous -anchor center \
-command [list xsfAnimAction $can previous]]
set stop [button $f_play.sto -image stop -anchor center \
-command [list xsfAnimAction $can stop]]
set next [button $f_play.nxt -image next -anchor center \
-command [list xsfAnimAction $can next]]
set forw [button $f_play.frw -image forward -anchor center \
-command [list xsfAnimAction $can forward]]
set last [button $f_play.lst -image last -anchor center \
-command [list xsfAnimAction $can last]]
pack $slide_label $f_play -side top -expand 1 -pady 1m
pack $first $backw $previ $stop $next $forw $last -side left
foreach {wid text} {
1st "First image"
bck "Play backward"
prv "Previous image"
sto "Stop playing"
nxt "Next image"
frw "Play forward"
lst "Last image"
} {
set path $f_play.$wid
DynamicHelp::register $path balloon $text
}
# --------------------------------------------------
# gifAnim widgets
# --------------------------------------------------
set gifAnim(make_gifAnim) 0
set gifAnim(button_text) "Animated GIF/MPEG/AVI >>"
set f_animgif [frame $f2.1]
set gifb [button $f2.gifb \
-textvariable gifAnim(button_text) \
-command [list gifAnimWidPack $f_animgif $can]]
pack $gifb -side top -padx 10 -pady 3 -fill x -expand 1
set xsfAnim(anim_ctrl_button) $gifb
if { ![info exists xcMisc(gif_encoder)] && ![info exists xcMisc(movie_encoder)] } {
$gifb config -state disabled
}
# make a movie-control windgets
gifAnim_controlWidgets $f_animgif $can $slide_label
set gifAnim(make_text) "Start Recording Animation"
set gifAnim(make_gifAnim) 0
set makeGIF [button $f_animgif.make -textvariable gifAnim(make_text) \
-command [list gifAnimMake $can $slide_label $f_animgif.make]]
pack $makeGIF -side top -padx 5 -pady 5
#
# CLOSE/HIDE widgets
#
set hide [button $f3.hide -text "Hide" \
-default active -command [list HideWin $t anim]]
set close [button $f3.close -text "Close" \
-command [list destroy $t]]
pack $hide $close -side left -ipadx 1m -ipady 1m -padx 2m -pady 2m
xcUpdateState
}
proc xsfAnimWidClose {t} {
global gifAnim
if { [winfo exists $t] } {
destroy $t
}
set gifAnim(anim_ctrl_widgets) 0
xcUpdateState
}
proc xsfAnimAction {can what} {
global xsfAnim
if { ![info exists xsfAnim(stop)] } {
set xsfAnim(stop) 0
}
if { ![info exists xsfAnim(anim_step)] } {
set xsfAnim(anim_step) 1
}
if { $xsfAnim(anim_step) < 1 } {
set xsfAnim(anim_step) 1
}
if { ![number xsfAnim(delay)] } {
tk_dialog [WidgetName] "ERROR" "ERROR: Please specify a number for delay !!!" error 0 OK
return 0
}
switch -exact -- $what {
stop {
set xsfAnim(stop) [expr {$xsfAnim(stop) ? 0 : 1}]
}
first {
if { $xsfAnim(current) == 1 } {
return
}
set xsfAnim(current) 1
xsfAnimRenderCurrent $can
}
backward {
while { $xsfAnim(current) > 1 && ! $xsfAnim(stop)} {
incr xsfAnim(current) -$xsfAnim(anim_step)
if { $xsfAnim(current) < 1 } {
set xsfAnim(current) 1
}
xsfAnimRenderCurrent $can
update
set xsfAnim(label_text_current) \
"Current slide: $xsfAnim(current)/$xsfAnim(nstep)"
after $xsfAnim(delay)
}
set xsfAnim(stop) 0
return
}
previous {
if { $xsfAnim(current) > 1 } {
incr xsfAnim(current) -$xsfAnim(anim_step)
if { $xsfAnim(current) < 1 } {
set xsfAnim(current) 1
}
xsfAnimRenderCurrent $can
} else {
return
}
}
next {
if { $xsfAnim(current) < $xsfAnim(nstep) } {
incr xsfAnim(current) $xsfAnim(anim_step)
if { $xsfAnim(current) > $xsfAnim(nstep) } {
set xsfAnim(current) $xsfAnim(nstep)
}
xsfAnimRenderCurrent $can
} else {
return
}
}
forward {
while { $xsfAnim(current) < $xsfAnim(nstep) && ! $xsfAnim(stop) } {
incr xsfAnim(current) $xsfAnim(anim_step)
if { $xsfAnim(current) > $xsfAnim(nstep) } {
set xsfAnim(current) $xsfAnim(nstep)
}
xsfAnimRenderCurrent $can
update
set xsfAnim(label_text_current) \
"Current slide: $xsfAnim(current)/$xsfAnim(nstep)"
after $xsfAnim(delay)
}
set xsfAnim(stop) 0
return
}
last {
if { $xsfAnim(current) == $xsfAnim(nstep) } {
return
}
set xsfAnim(current) $xsfAnim(nstep)
xsfAnimRenderCurrent $can
}
}
set xsfAnim(label_text_current) "Current slide: $xsfAnim(current)/$xsfAnim(nstep)"
}
proc xsfAnimRenderCurrent can {
global xsfAnim gifAnim periodic nxdir nydir nzdir geng system \
working_XSF_file
SetWatchCursor
set working_XSF_file $xsfAnim(filename).$xsfAnim(current)
UpdateWMTitle $working_XSF_file
if { $periodic(dim) > 0 } {
# new: tk Mon Jan 27 15:27:23 CET 2003
CellMode 1
#GenGeom $geng(M1_PRIM) $geng(M2_CELL) 11 1 $nxdir $nydir $nzdir \
# xc_struc.$system(PID)
#UpdateStruct $can xc_struc.$system(PID)
} else {
UpdateStruct $can $system(SCRDIR)/$working_XSF_file
}
ResetCursor
if { $gifAnim(make_gifAnim) == 1 } {
#
# Animated-GIF option: print this snapshot to GIF file
gifAnimPrintCurrent $can
}
return
}
# sample AXSF file (fixed-cell):
#------------------
# ANIMSTEPS 18
# DIM-GROUP
# 3 1
# PRIMVEC
# 5.8859563944 0.0000000000 0.0000000000
# 0.0000000000 5.8859563944 0.0000000000
# 0.0000000000 0.0000000000 23.3615963678
# PRIMCOORD 1
#32 1
# 47 3.8888048966 4.1163007841 19.5974532965
# 47 3.8888048966 1.7696556103 19.5974532965
# 47 1.9971514978 4.1163007841 19.5974532965
# 47 1.9971514978 1.7696556103 19.5974532965
# 6 2.9429781972 3.5961067857 19.2368415845
# 6 2.9429781972 2.2898496088 19.2368415845
# ..............
# sample AXSF file (variable-cell):
#------------------
# ANIMSTEPS 18
# DIM-GROUP
# 3 1
# PRIMVEC 1
# 5.8859563944 0.0000000000 0.0000000000
# 0.0000000000 5.8859563944 0.0000000000
# 0.0000000000 0.0000000000 23.3615963678
# PRIMCOORD 1
#32 1
# 47 3.8888048966 4.1163007841 19.5974532965
# 47 3.8888048966 1.7696556103 19.5974532965
# 47 1.9971514978 4.1163007841 19.5974532965
# 47 1.9971514978 1.7696556103 19.5974532965
# 6 2.9429781972 3.5961067857 19.2368415845
# 6 2.9429781972 2.2898496088 19.2368415845
# ..............
######################################################################
# xsfParseAnim --
# Converts AXSF file to sequence of XSF files. If the AXSF tail of
# filename is "name", then the generated sequence of XSF files will
# be named "name.n", where "n" is the sequent number starting from
# 1 and up. The files are generated in `pwd`.
#
# Arguments:
# file file is the the FULL-PATH/FILENAME
#
# Results:
# Returns the number of XSF files genetared. It return 0 if
# ANIMSTEP keyword is not found and -1 if parsing error occurs
proc xsfParseAnim file {
# default type of animated XSF file
set axsf_type fixed-cell
set filetail [file tail $file]
set file [gunzipXSF $file]
set content [ReadFile -nonewline $file]
set ConList [split $content \n]
unset content
# read NUMBER of ANIMATION STEPS
set AnimSteps [lindex [lindex $ConList \
[lsearch -glob $ConList "*ANIMSTEP*"]] 1]
if { $AnimSteps < 0 } {
return 0
}
# read HEADER of FILE
set ind [lsearch -glob $ConList "*DIM-GROUP*"]
if { $ind >= 0 } {
lappend HList [lrange $ConList $ind [expr $ind + 1]]
}
set ind [lsearch -regexp $ConList "^ *MOLECULE*"]
if { $ind >= 0 } {
lappend HList [linedex $ConList $ind]
}
set ind [lsearch -regexp $ConList "^ *POLYMER*"]
if { $ind >= 0 } {
lappend HList [lindex $ConList $ind]
}
set ind [lsearch -regexp $ConList "^ *SLAB*"]
if { $ind >= 0 } {
lappend HList [lindex $ConList $ind]
}
set ind [lsearch -regexp $ConList "^ *CRYSTAL*"]
if { $ind >= 0 } {
lappend HList [lindex $ConList $ind]
}
set ind [lsearch -glob $ConList "*PRIMVEC*"]
if { $ind >= 0 } {
# check if it is variable- or fixed-cell animated XSF
if { [llength [lindex $ConList $ind]] == 1 } {
# fixed-cell XSF
set axsf_type "fixed-cell"
lappend HList [lrange $ConList $ind [expr $ind + 3]]
} else {
# variable-cell XSF
set axsf_type "variable-cell"
}
}
set ind [lsearch -glob $ConList "*CONVVEC*"]
if { $ind >= 0 } {
if { [llength [lindex $ConList $ind]] == 1 } {
# fixed-cell XSF
lappend HList [lrange $ConList $ind [expr $ind + 3]]
}
}
# transform HList for writing to XSF file
if { [info exists HList] } {
foreach record $HList {
foreach elem $record {
append Header ${elem}\n
}
}
unset HList
} else {
set Header {}
}
# check if there is a PRIMCOORD record and if it is composed like:
# PRIMCOORD <n>, where n is a number
set ind [lsearch -glob $ConList "*PRIMCOORD*"]
if { $ind >= 0 && [llength [lindex $ConList $ind]] > 1 } {
# parse PRIMCOORD records and write sequence of XSF files
for {set i 1} {$i <= $AnimSteps} {incr i} {
set FileName $filetail.$i
append FileContent $Header
#
# for variable-cell XSF we should write the vectors !!!
#
if { $axsf_type == "variable-cell" } {
# PRIMVEC
set ind [lsearch -glob $ConList "*PRIMVEC*$i*"]
if { $ind < 0 } {
# mandatory keyword: ERROR parsing AXSF file
return -1
}
append FileContent [_xsfAnimParse_getVec $ConList $ind]
# CONVVEC
set ind [lsearch -glob $ConList "*CONVVEC*$i*"]
if { $ind >= 0 } {
# optional keyword
append FileContent [_xsfAnimParse_getVec $ConList $ind]
}
}
# PRIMCOORD
set ind [lsearch -glob $ConList "*PRIMCOORD*$i*"]
if { $ind < 0 } {
# mandatory keyword: ERROR parsing AXSF file
return -1
}
incr ind
set Natm [lindex [lindex $ConList $ind] 0]
set AList [lrange $ConList $ind [expr $ind + $Natm]]
append FileContent "PRIMCOORD\n"
foreach elem $AList {
append atoms ${elem}\n
}
append FileContent $atoms
WriteFile $FileName $FileContent w
unset FileContent atoms
}
} else {
# must be ATOMS <n> type of AXSF file
set ind [lsearch -glob $ConList "*ATOMS*"]
if { $ind >= 0 && [llength [lindex $ConList $ind]] > 1 } {
# parse ATOMS records and write sequence of XSF files
for {set i 1} {$i <= $AnimSteps} {incr i} {
set FileName $filetail.$i
set ind [lsearch -glob $ConList "*ATOMS*$i*"]
if { $ind < 0 } {
# ERROR parsing AXSF file
return -1
}
# ATOMS section does not specify how many atoms there is,
# hence search for next ATOMS <n> string !!!
if { $i < $AnimSteps } {
set ii [expr $i + 1]
set ind1 [lsearch -glob $ConList "*ATOMS*$ii*"]
set AList [lrange $ConList \
[expr $ind + 1] [expr $ind1 - 1]]
} else {
set AList [lrange $ConList [expr $ind + 1] end]
}
#append FileContent $Header
append FileContent ATOMS\n
foreach elem $AList {
append atoms ${elem}\n
}
if { [info exists atoms] } {
append FileContent $atoms
WriteFile $FileName $FileContent w
#xcDebug -stderr "ANIMSTEP: $i"
#xcDebug -stderr $FileContent
unset FileContent atoms
}
}
}
}
return $AnimSteps
}
#
# utility library: returns the whole PRIMVEC or CONVVEC section
#
proc _xsfAnimParse_getVec {ConList ind} {
append _vec [lindex [lindex $ConList $ind] 0]\n
incr ind
append _vec [lindex $ConList $ind]\n
incr ind
append _vec [lindex $ConList $ind]\n
incr ind
append _vec [lindex $ConList $ind]\n
return $_vec
}
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